Pairwise Alignments

Query, 334 a.a., Holliday junction branch migration DNA helicase RuvB from Vibrio cholerae E7946 ATCC 55056

Subject, 375 a.a., Holliday junction DNA helicase B from Synechococcus elongatus PCC 7942

 Score =  370 bits (950), Expect = e-107
 Identities = 188/329 (57%), Positives = 243/329 (73%), Gaps = 1/329 (0%)

Query: 5   DRLIAPISNHFKDEEVIDRAIRPKKLADYQGQDHVRDQMEIFIQAAQMRQEALDHLLIFG 64
           D L+ P +   + +   D+ IRP++LADY GQ  ++D + I I AA+ RQE+LDHLL++G
Sbjct: 29  DSLVRPQAAPEESQRPEDQ-IRPQRLADYIGQPELKDVLGIAIAAAKSRQESLDHLLLYG 87

Query: 65  PPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMV 124
           PPGLGKTT+A ++A EMGV  R T+ P LE+  D+  LL NL+  DVLFIDEIHRL  + 
Sbjct: 88  PPGLGKTTMALVLATEMGVQCRITTAPALERPRDIVGLLVNLQPGDVLFIDEIHRLPKVT 147

Query: 125 EEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLE 184
           EE+LYPAMED++LDI IG+G +AR+  I L PFTL+GATT+ G+LTSPLRDRFG+VQRL 
Sbjct: 148 EEILYPAMEDFRLDITIGKGQSARTRSITLQPFTLVGATTQIGALTSPLRDRFGLVQRLR 207

Query: 185 YYKVADLQHIVQRSAQCLGLSMDSEGALEVARRARGTPRIANRLLRRVRDYAEVKGDGHI 244
           +Y+V  L  IVQR+A+ L   +D  GA E+A+R+RGTPRIANRLLRRVRDYA VK  G I
Sbjct: 208 FYEVEALTDIVQRTARLLNTPLDQAGAEEIAKRSRGTPRIANRLLRRVRDYAAVKAPGPI 267

Query: 245 CAQTADRALNMLDVDHQGFDYMDRKLLLAIMEKFSGGPVGIDNLAAAIGEEKDTIEDVLE 304
               A  AL + +VD  G D+ DR+LL  ++E F GGPVG++ LAAA GE+  T+E+V E
Sbjct: 268 TGAIAATALELYNVDPCGLDWTDRRLLSHLIENFGGGPVGLETLAAATGEDAQTVEEVYE 327

Query: 305 PFLIQQGYLQRTPRGRIATDRAYLHFGIE 333
           P+L+Q GYLQRTPRGR+AT  A+ H G E
Sbjct: 328 PYLLQIGYLQRTPRGRVATPAAWRHLGYE 356