Pairwise Alignments

Query, 334 a.a., Holliday junction branch migration DNA helicase RuvB from Vibrio cholerae E7946 ATCC 55056

Subject, 436 a.a., recombination factor protein RarA from Sinorhizobium meliloti 1021

 Score = 63.2 bits (152), Expect = 1e-14
 Identities = 56/217 (25%), Positives = 94/217 (43%), Gaps = 32/217 (14%)

Query: 25  IRPKKLADYQGQDHVRDQMEIFIQAAQMRQEALDHLLIFGPPGLGKTTLANIVANEMGVN 84
           +RP+ LA+  GQ+H+     +  +   +   +L  ++ +GPPG GKTT+A +++ E G+ 
Sbjct: 23  LRPRTLAEVTGQEHLTGPDGVLTR--MIASGSLGSMIFWGPPGTGKTTVARLLSGEAGLA 80

Query: 85  IRTTSG-----PVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDI 139
               S        L+K  + A          +LF+DEIHR +   ++   P MED  +  
Sbjct: 81  FEQISAIFSGVADLKKVFESARARRMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGTV-- 138

Query: 140 MIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLEYYKVADLQHIVQR 197
                              L+GATT   S  L + L  R  ++   + +  A L+ +++R
Sbjct: 139 ------------------ILVGATTENPSFELNAALLSRARVL-TFKPHDEASLEELLKR 179

Query: 198 SAQCLG--LSMDSEGALEVARRARGTPRIANRLLRRV 232
           +    G  L +D E    + R A G  R    L   V
Sbjct: 180 AEAAEGKPLPLDDEARASLIRMADGDGRAVLTLAEEV 216