Pairwise Alignments

Query, 334 a.a., Holliday junction branch migration DNA helicase RuvB from Vibrio cholerae E7946 ATCC 55056

Subject, 442 a.a., recombination factor protein RarA (RefSeq) from Shewanella amazonensis SB2B

 Score = 58.2 bits (139), Expect = 4e-13
 Identities = 68/269 (25%), Positives = 115/269 (42%), Gaps = 36/269 (13%)

Query: 25  IRPKKLADYQGQDHVRDQMEIFIQAAQMRQEALDHLLIFGPPGLGKTTLANIVANEMGVN 84
           +RP  + +Y GQ H+  + +   QA  +    +  +L++GPPG GKTTLA +VA     +
Sbjct: 18  MRPASVEEYIGQSHLLGEGKPLRQA--LLAGKVHSMLLWGPPGTGKTTLAELVARYANAH 75

Query: 85  IR----TTSG-----PVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDY 135
           +      TSG       +E+A ++A    +  +  +LF+DE+HR +   ++   P +ED 
Sbjct: 76  VERISAVTSGVKEIRAAIEQAKNVA---QSRGQRTLLFVDEVHRFNKSQQDAFLPFIEDG 132

Query: 136 QLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEYYKV----ADL 191
            + I IG      S +++              +L S  R R  +++RLE   +    A  
Sbjct: 133 TV-IFIGATTENPSFEVN-------------NALLS--RCRVYLIKRLEDDAIGQILAQA 176

Query: 192 QHIVQRSAQCLGLSMDSEGALEVARRARGTPRIANRLLRRVRDYAEVKGDGHICAQTADR 251
                R     GL + +E    +AR   G  R A  LL  + D     G+ ++   +   
Sbjct: 177 NSDEARGLGKRGLLLKAELKSAIARLCDGDARKALNLLELMSDLLPDGGEYNLELLSEVA 236

Query: 252 ALNMLDVDHQGFDYMDRKLLLAIMEKFSG 280
                  D  G  Y D  L+ A+ +   G
Sbjct: 237 GHQAAGYDKNGDQYYD--LISAVHKSIRG 263