Pairwise Alignments

Query, 334 a.a., Holliday junction branch migration DNA helicase RuvB from Vibrio cholerae E7946 ATCC 55056

Subject, 337 a.a., Holliday junction DNA helicase B (RefSeq) from Shewanella loihica PV-4

 Score =  495 bits (1274), Expect = e-145
 Identities = 255/334 (76%), Positives = 290/334 (86%), Gaps = 3/334 (0%)

Query: 1   MIEADRLI--APISNHFKDEEVIDRAIRPKKLADYQGQDHVRDQMEIFIQAAQMRQEALD 58
           MIEADRL+   P     +DE+ IDRA+RPK L +Y GQD  R Q+++FI+AAQ R EALD
Sbjct: 1   MIEADRLVHAQPQGTEERDEQ-IDRAMRPKLLDEYTGQDDTRAQLKVFIEAAQKRGEALD 59

Query: 59  HLLIFGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIH 118
           H+LI+GPPGLGKTTLA IVANEMGVNI++TSGPVLEKAGDLAALLTNLE  DVLFIDEIH
Sbjct: 60  HMLIYGPPGLGKTTLAMIVANEMGVNIKSTSGPVLEKAGDLAALLTNLEAGDVLFIDEIH 119

Query: 119 RLSPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFG 178
           RLSP+VEE+LYPAMEDYQLDIMIGEGPAARSIK++LPPFTLIGATTRAG+LTSPLR RFG
Sbjct: 120 RLSPVVEEILYPAMEDYQLDIMIGEGPAARSIKLELPPFTLIGATTRAGALTSPLRARFG 179

Query: 179 IVQRLEYYKVADLQHIVQRSAQCLGLSMDSEGALEVARRARGTPRIANRLLRRVRDYAEV 238
           I  RLE+Y V DL  IV RSA+ L L +D EGA+EVARR+RGTPRIANRLLRRVRDYAEV
Sbjct: 180 IPLRLEFYNVKDLSSIVTRSAKVLELPIDQEGAVEVARRSRGTPRIANRLLRRVRDYAEV 239

Query: 239 KGDGHICAQTADRALNMLDVDHQGFDYMDRKLLLAIMEKFSGGPVGIDNLAAAIGEEKDT 298
           K DG +    A+ AL+MLDVD +GFDYMDRKLLLAI++KF GGPVG+DNLAAAIGEE++T
Sbjct: 240 KHDGEVNKVVAESALDMLDVDVEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERET 299

Query: 299 IEDVLEPFLIQQGYLQRTPRGRIATDRAYLHFGI 332
           IEDVLEPFLIQQG++QRTPRGRIAT RAY HF +
Sbjct: 300 IEDVLEPFLIQQGFIQRTPRGRIATARAYQHFNL 333