Pairwise Alignments

Query, 334 a.a., Holliday junction branch migration DNA helicase RuvB from Vibrio cholerae E7946 ATCC 55056

Subject, 443 a.a., recombination factor protein RarA (RefSeq) from Shewanella loihica PV-4

 Score = 60.8 bits (146), Expect = 6e-14
 Identities = 65/267 (24%), Positives = 119/267 (44%), Gaps = 32/267 (11%)

Query: 25  IRPKKLADYQGQDHVRDQMEIFIQAAQMRQEALDHLLIFGPPGLGKTTLANIVANEMGVN 84
           +RP+ L+ Y GQDH+  + +   QA +  +     ++ +GPPG GKTTLA +VA+    +
Sbjct: 19  MRPETLSQYIGQDHLLGEGKPLRQALEAGRA--HSMMFWGPPGTGKTTLAELVAHYANAH 76

Query: 85  IRTTSGPVLEKAGDLAALLTNLE-------ENDVLFIDEIHRLSPMVEEVLYPAMEDYQL 137
           +   S  V     ++ A + + +       +  +LF+DE+HR +   ++   P +ED  +
Sbjct: 77  VERISA-VTSGVKEIRAAIEHAKSVAQSRGQRTLLFVDEVHRFNKSQQDAFLPFIEDGTV 135

Query: 138 DIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEYYKVADL-QHIVQ 196
            I IG      S +I+              +L S  R R  +++RL+  ++  + +  ++
Sbjct: 136 -IFIGATTENPSFEIN-------------NALLS--RARVYLIKRLQDEEIIKIVRQALE 179

Query: 197 RSAQCLG---LSMDSEGALEVARRARGTPRIANRLLRRVRDYAEVKGDGHICAQTADRAL 253
              + LG   L M +E A ++A    G  R A  L+  + D     G+ +          
Sbjct: 180 DGERGLGKRQLKMPNEVAGKLASLCDGDARKALNLIELMSDMLPDGGEFNAQMLIEVAGQ 239

Query: 254 NMLDVDHQGFDYMDRKLLLAIMEKFSG 280
            +   D  G  Y D  L+ A+ +   G
Sbjct: 240 QLAGFDKNGDQYYD--LISAVHKSIRG 264