Pairwise Alignments

Query, 334 a.a., Holliday junction branch migration DNA helicase RuvB from Vibrio cholerae E7946 ATCC 55056

Subject, 788 a.a., CDC48 family AAA ATPase from Methanococcus maripaludis S2

 Score = 53.9 bits (128), Expect = 1e-11
 Identities = 32/75 (42%), Positives = 42/75 (56%), Gaps = 8/75 (10%)

Query: 60  LLIFGPPGLGKTTLANIVANEMGVNIRTTSGP------VLEKAGDLAALLTNLEEN--DV 111
           +L+ GPPG GKT LA  VANE G N  T +GP      V E   +L  +    EEN   +
Sbjct: 214 VLLAGPPGTGKTLLAKAVANEAGANFYTINGPEIMSKYVGETEENLRKIFEEAEENSPSI 273

Query: 112 LFIDEIHRLSPMVEE 126
           +FIDEI  ++P  +E
Sbjct: 274 IFIDEIDAVAPKRDE 288



 Score = 43.1 bits (100), Expect = 2e-08
 Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 16/110 (14%)

Query: 29  KLADYQGQDHVRDQMEIFIQAAQMRQEALDHL--------LIFGPPGLGKTTLANIVANE 80
           K +D  G + ++  ++  ++     +E  + +        L+FGPPG GKT LA  VANE
Sbjct: 505 KWSDVGGLEDIKQDLKEAVEWPIKNKEMFERMGIRPPKGVLLFGPPGTGKTLLAKAVANE 564

Query: 81  MGVNIRTTSGPVL--------EKAGDLAALLTNLEENDVLFIDEIHRLSP 122
              N  +  GP +        EKA              V+F DEI  ++P
Sbjct: 565 SEANFISVKGPEIFSKWVGESEKAIREIFRKARQAAPTVIFFDEIDSVAP 614