Pairwise Alignments

Query, 334 a.a., Holliday junction branch migration DNA helicase RuvB from Vibrio cholerae E7946 ATCC 55056

Subject, 334 a.a., Holliday junction DNA helicase RuvB (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  506 bits (1303), Expect = e-148
 Identities = 256/334 (76%), Positives = 295/334 (88%), Gaps = 2/334 (0%)

Query: 1   MIEADRLIAPISNHFKDEEVIDRAIRPKKLADYQGQDHVRDQMEIFIQAAQMRQEALDHL 60
           MIEADRLI P       ++VIDRA+RPK L +Y GQD  R Q+++FIQAA+ R+EALDH+
Sbjct: 1   MIEADRLIQPQLQG--QDDVIDRAMRPKLLDEYTGQDDTRAQLKVFIQAAKNREEALDHM 58

Query: 61  LIFGPPGLGKTTLANIVANEMGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRL 120
           LI+GPPGLGKTTLA IVANEMGVNI++TSGPVLEKAGDLAALLTNLE  DVLFIDEIHRL
Sbjct: 59  LIYGPPGLGKTTLAMIVANEMGVNIKSTSGPVLEKAGDLAALLTNLEAGDVLFIDEIHRL 118

Query: 121 SPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIV 180
           SP+VEE+LYPAMEDYQLDIMIGEGPAARSIK+DLPPFTL+GATTRAG+LTSPLR RFGI 
Sbjct: 119 SPVVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGALTSPLRARFGIP 178

Query: 181 QRLEYYKVADLQHIVQRSAQCLGLSMDSEGALEVARRARGTPRIANRLLRRVRDYAEVKG 240
            RLE+Y V DL  IV RSAQ +GL++DSEGA E+A+R+RGTPRIANRLLRRVRDYAEV+ 
Sbjct: 179 LRLEFYNVKDLSTIVTRSAQVMGLAIDSEGATEIAKRSRGTPRIANRLLRRVRDYAEVQH 238

Query: 241 DGHICAQTADRALNMLDVDHQGFDYMDRKLLLAIMEKFSGGPVGIDNLAAAIGEEKDTIE 300
           DG +    A+ ALN+LDVD +GFDYMDRKLLLAI++KF GGPVG+DNLAAAIGEE++TIE
Sbjct: 239 DGAVTQNVAELALNLLDVDGEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIE 298

Query: 301 DVLEPFLIQQGYLQRTPRGRIATDRAYLHFGIEK 334
           DVLEPFLIQQG++QRTPRGRIAT RAY+HFG+ K
Sbjct: 299 DVLEPFLIQQGFIQRTPRGRIATARAYVHFGMIK 332