Pairwise Alignments

Query, 334 a.a., Holliday junction branch migration DNA helicase RuvB from Vibrio cholerae E7946 ATCC 55056

Subject, 445 a.a., ATPase, AAA family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 58.5 bits (140), Expect = 3e-13
 Identities = 35/128 (27%), Positives = 65/128 (50%), Gaps = 8/128 (6%)

Query: 13  NHFKDEEVIDRAIRPKKLADYQGQDHVRDQMEIFIQAAQMRQEALDHLLIFGPPGLGKTT 72
           N   D   +   +RP+ +A+Y GQ H+  + +   QA +  +     ++++GPPG GKTT
Sbjct: 9   NFAPDFRPLAARMRPRTIAEYIGQAHLLGEGQPLRQALEAGRA--HSMMLWGPPGTGKTT 66

Query: 73  LANIVANEMGVNIR----TTSG--PVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEE 126
           LA ++A+    ++      TSG   +        A+  +  +  +LF+DE+HR +   ++
Sbjct: 67  LAELIAHYSNAHVERISAVTSGVKDIRGAIEQAQAIAQSRGQRTLLFVDEVHRFNKSQQD 126

Query: 127 VLYPAMED 134
              P +ED
Sbjct: 127 AFLPFIED 134