Pairwise Alignments

Query, 334 a.a., Holliday junction branch migration DNA helicase RuvB from Vibrio cholerae E7946 ATCC 55056

Subject, 436 a.a., AAA ATPase central domain protein (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 65.5 bits (158), Expect = 2e-15
 Identities = 60/220 (27%), Positives = 97/220 (44%), Gaps = 32/220 (14%)

Query: 25  IRPKKLADYQGQDHVRDQMEIFIQAAQMRQEALDHLLIFGPPGLGKTTLANIVANE---- 80
           +RP  L++  GQDH+          A +   AL  ++ +GPPG+GKTT+A ++A E    
Sbjct: 24  LRPAHLSEVIGQDHLLGPDGPL--GAMLANRALSSVIFWGPPGVGKTTIARLLAAETDLA 81

Query: 81  -MGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDI 139
            + ++   T  P L K  + A L     +  +LF+DEIHR +   ++   P MED  +  
Sbjct: 82  FVQISAIFTGVPDLRKVFEAARLRRQGGQGTLLFVDEIHRFNKAQQDGFLPHMEDGTI-- 139

Query: 140 MIGEGPAARSIKIDLPPFTLIGATTRAGS--LTSPLRDRFGIVQRLEYYKVADLQHIVQR 197
                              L+GATT   S  L + +  R  ++  L     A L+ ++ R
Sbjct: 140 ------------------VLVGATTENPSFELNAAVLSRAQVLV-LHRLDAAALEALLAR 180

Query: 198 SAQCLGLSMDSEGALEVA--RRARGTPRIANRLLRRVRDY 235
           +   LG+S+  E     A    A G  R    L+ +V  +
Sbjct: 181 AEALLGVSLPLEPGARAALIEMADGDGRALLNLIEQVASW 220