Pairwise Alignments

Query, 334 a.a., Holliday junction branch migration DNA helicase RuvB from Vibrio cholerae E7946 ATCC 55056

Subject, 343 a.a., Holliday junction DNA helicase ruvB (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  377 bits (967), Expect = e-109
 Identities = 186/314 (59%), Positives = 239/314 (76%)

Query: 18  EEVIDRAIRPKKLADYQGQDHVRDQMEIFIQAAQMRQEALDHLLIFGPPGLGKTTLANIV 77
           E   + A+RP    D+ GQD V + + IF++AA++R EALDH+L+ GPPGLGKTTL+NI+
Sbjct: 17  ERDFENALRPLSFEDFSGQDKVVENLRIFVKAARLRGEALDHVLLHGPPGLGKTTLSNII 76

Query: 78  ANEMGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQL 137
           ANE+GV  + TSGPVL+K GDLA +LT+LE NDVLFIDEIHRLSP+VEE LY AMEDY++
Sbjct: 77  ANELGVGFKVTSGPVLDKPGDLAGVLTSLEPNDVLFIDEIHRLSPVVEEYLYSAMEDYRI 136

Query: 138 DIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEYYKVADLQHIVQR 197
           DIMI +GP+ARSI+IDL PFTL+GATTR+G LT+PLR RFGI   LEYY    L +I++R
Sbjct: 137 DIMIDKGPSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINLHLEYYDDDILSNIIRR 196

Query: 198 SAQCLGLSMDSEGALEVARRARGTPRIANRLLRRVRDYAEVKGDGHICAQTADRALNMLD 257
           SA  L +      A E+A R+RGTPRIAN LLRRVRD+A+VKG G I  + A  AL  L+
Sbjct: 197 SASILDVPCSVRAASEIASRSRGTPRIANALLRRVRDFAQVKGSGSIDTEIAQFALEALN 256

Query: 258 VDHQGFDYMDRKLLLAIMEKFSGGPVGIDNLAAAIGEEKDTIEDVLEPFLIQQGYLQRTP 317
           +D  G D +D K+L  I++KF GGPVG+  +A A+GE+  TIE+V EPFLI++G+++RTP
Sbjct: 257 IDKYGLDEIDNKILCTIIDKFKGGPVGLTTIATALGEDAGTIEEVYEPFLIKEGFMKRTP 316

Query: 318 RGRIATDRAYLHFG 331
           RGR  T+ AY H G
Sbjct: 317 RGREVTELAYKHLG 330