Pairwise Alignments

Query, 541 a.a., cytochrome d terminal oxidase subunit 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 478 a.a., putative Cytochrome bd2, subunit I from Pseudomonas fluorescens FW300-N2E2

 Score =  244 bits (622), Expect = 7e-69
 Identities = 155/508 (30%), Positives = 246/508 (48%), Gaps = 72/508 (14%)

Query: 15  IDVVDLSRLQFALTAMYHFLFVPLTLGMAFLLAIMESLYVMTDKQIYKDMTKFWGKLFGI 74
           ++ +DL+R+QFA T  +H LF  +T+G+A  LA++E L++ T    Y+D+  FW K+F +
Sbjct: 4   LEALDLARIQFAFTISFHILFPAITIGLASYLAVLEGLWLKTRDDTYRDLYHFWSKIFAV 63

Query: 75  NFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEALVAFFLESTFVGLFFFGWDRL 134
           NF +GV +GL M +QFGTNWS +S + G + G  L  E L AFFLE+ F+G+  FGW+R+
Sbjct: 64  NFGMGVVSGLVMAYQFGTNWSRFSDFAGAVTGPLLTYEVLTAFFLEAGFLGVMLFGWNRV 123

Query: 135 SKRQHLVVTWLVALGSNFSALWILVANGWMQNPVGSEFNFETMRMEMVSFADVVLNPVAQ 194
            +  H   T +VA+G+  S  WIL +N WMQ P G  +     R+  V +  VV NP   
Sbjct: 124 GRGLHFFSTVMVAIGTLISTFWILSSNSWMQTPQG--YEIIDGRVIPVDWLAVVFNPSFP 181

Query: 195 VKFVHTVAAGYTTGAMFILGISAYYLLKGRDVAFARRSFAIAASFGMASVLSVIVLGDES 254
            + +H   A +   A F+   +A++LL+GRD    RR  ++A    +       V+GD  
Sbjct: 182 YRLLHMSTAAFVATAFFVGSSAAWHLLRGRDTPAIRRMLSMAMWMALLVAPIQAVIGDFH 241

Query: 255 GYELGEVQRVKLAAIESEWH---TEPAPAAFTLFGIPNQEEMRTDYAIKIPFALGIIATR 311
           G    + Q  K+AAIE  W     EP P    LFG P+ +  +T +A++IP+   +I T 
Sbjct: 242 GLNTLKHQPAKIAAIEGHWENVGNEPTP--LILFGWPDMQAEKTKFAVEIPYLGSLILTH 299

Query: 312 SLDEQVVGLRDLRDEHVERIRTGIYAYDLLERLRAGEKTPENMAAFDEVKHDLGYGLLLK 371
           SLD+QV  L++                         E  P +   F   +  +G GLL+ 
Sbjct: 300 SLDKQVPALKEF----------------------PPEDRPNSTIVFWSFRVMVGLGLLM- 336

Query: 372 RYTDKVTDATEEQIQAAADDSIPTVWPLFWSFRIMVACGFIMLVVFGAAFIQTCRQKIEQ 431
                                + ++W L  + RI  +  F+ +V+               
Sbjct: 337 -----------------IFTGLCSLW-LRRNDRIYQSRPFLYMVL--------------- 363

Query: 432 KKWVLKAALFSIPLPWIAVETGWFVAEYGRQPWAVGEILPVNVAASALSAGEIITSMLAI 491
             W+  + L +I   W       F  E GRQPW V  ++    A+S  S  ++  +++  
Sbjct: 364 --WMGPSGLVAILAGW-------FTTEIGRQPWVVYGLMRTADASSGHSFTQMSITLVLF 414

Query: 492 LALYTIFLIAEVYLMVKFTRKGPSSLKT 519
           + +Y     A +  M++  RKGP + +T
Sbjct: 415 VVVYFALFGAGLSYMMRLVRKGPEAHET 442