Pairwise Alignments

Query, 541 a.a., cytochrome d terminal oxidase subunit 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 479 a.a., Cytochrome bd-type quinol oxidase, subunit 1 from Pseudomonas stutzeri RCH2

 Score =  233 bits (594), Expect = 1e-65
 Identities = 115/313 (36%), Positives = 182/313 (58%), Gaps = 3/313 (0%)

Query: 15  IDVVDLSRLQFALTAMYHFLFVPLTLGMAFLLAIMESLYVMTDKQIYKDMTKFWGKLFGI 74
           ++ ++L+R+QFA T  +H +F  +T+G+A  LA++E+L++ T +++Y+D+  FW K+F +
Sbjct: 4   LEALELARIQFAFTITFHIIFPAITIGLASFLAVLEALWLKTRQEVYRDLYHFWLKIFAV 63

Query: 75  NFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEALVAFFLESTFVGLFFFGWDRL 134
           NF +GV +G+ M +QFGTNWS YS + G + G  L  E L AFFLE+ F+G+  FGW+R+
Sbjct: 64  NFGMGVVSGIVMAYQFGTNWSAYSEFAGSVTGPLLTYEVLTAFFLEAGFLGVMLFGWNRV 123

Query: 135 SKRQHLVVTWLVALGSNFSALWILVANGWMQNPVGSEFNFETMRMEMVSFADVVLNPVAQ 194
            +R H   T +VA+G+  S  WIL +N WM  P G E   + + + +  FA ++ NP   
Sbjct: 124 GERLHFFSTLMVAIGTLISTFWILASNSWMHTPQGHEI-IDGIVVPVDWFA-IIFNPSFP 181

Query: 195 VKFVHTVAAGYTTGAMFILGISAYYLLKGRDVAFARRSFAIAASFGMASVLSVIVLGDES 254
            +  H   A +   A F+   +A++LL+G+D    R+  ++A    +       V+GD  
Sbjct: 182 YRLAHMAVAAFLATAFFVGASAAWHLLRGKDTPAIRKMLSMAMWMALLVAPVQAVIGDFH 241

Query: 255 GYELGEVQRVKLAAIESEW-HTEPAPAAFTLFGIPNQEEMRTDYAIKIPFALGIIATRSL 313
           G    E Q  K+AA+E  W ++E  P    LFG P+ E   T Y I+IP+   II   SL
Sbjct: 242 GLNTLEYQPAKIAAMEGHWDNSEGGPTPLLLFGWPDMEAEETRYKIEIPYLASIILKHSL 301

Query: 314 DEQVVGLRDLRDE 326
            E +  L+D   E
Sbjct: 302 TEPIPALKDFPPE 314



 Score = 66.2 bits (160), Expect = 3e-15
 Identities = 35/117 (29%), Positives = 63/117 (53%), Gaps = 2/117 (1%)

Query: 399 LFWSFRIMVACGFIMLVVFGAAFIQTCRQKIEQKKWVLKAALFSIPLPWIAVETGWFVAE 458
           +FW+FRIMVA G +M+V    + +     ++   +  L+  L   P   IA+  GW+  E
Sbjct: 322 VFWTFRIMVALGLLMIVTGIWSLLLRRGDRLYSSRPFLRLVLLMGPSGLIAILAGWYTTE 381

Query: 459 YGRQPWAVGEILPVNVAASALSAGEI-ITSMLAILALYTIFLIAEVYLMVKFTRKGP 514
            GRQPW +  ++    A S   AG++ +T  + ++  + +F +  VY++ +  +KGP
Sbjct: 382 IGRQPWVIYGLMRTADAVSNHGAGQLGLTLAMFVVVYFAVFGVGMVYVL-RLVKKGP 437