Pairwise Alignments

Query, 541 a.a., cytochrome d terminal oxidase subunit 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 469 a.a., putative Cytochrome bd2, subunit I from Xanthomonas campestris pv. campestris strain 8004

 Score =  227 bits (579), Expect = 7e-64
 Identities = 145/502 (28%), Positives = 227/502 (45%), Gaps = 70/502 (13%)

Query: 15  IDVVDLSRLQFALTAMYHFLFVPLTLGMAFLLAIMESLYVMTDKQIYKDMTKFWGKLFGI 74
           +D + LSR+QFA    +H LF   T+G+A LL  +E  ++ +   ++K +  FW ++F +
Sbjct: 1   VDALLLSRIQFAFVISFHVLFPAFTIGLASLLGFLEWRWLRSHDDVWKRLYFFWLRIFAV 60

Query: 75  NFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEALVAFFLESTFVGLFFFGWDRL 134
           +F +GV +G+ M FQFG NW   S   G + G  L+ E L AFFLE++F+G+  FGW R+
Sbjct: 61  SFGMGVVSGIVMAFQFGANWPELSRIAGGVIGPLLSYEVLTAFFLEASFLGVMLFGWGRV 120

Query: 135 SKRQHLVVTWLVALGSNFSALWILVANGWMQNPVGSEFNFETMRMEMVSFADVVLNPVAQ 194
           S+R H   T +VALG+  S  WIL +N W+  P G  FN     +  V +  ++ NP   
Sbjct: 121 SERLHFFATCMVALGTLVSTFWILSSNSWLHTPRG--FNMVNGVVHPVDWLQIIFNPSFP 178

Query: 195 VKFVHTVAAGYTTGAMFILGISAYYLLKGRDVAFARRSFAIAASFGMASVLSVIVLGDES 254
            +  H     + T    + G+ AYYL K + V  A     +A +F    +   +++GD+ 
Sbjct: 179 YRLTHMALGSFITTCFVVGGVGAYYLRKRKHVDAAALMLRLAVAFAAIVLPIQVLVGDQH 238

Query: 255 GYELGEVQRVKLAAIESEWHT--EPAPAAFTLFGIPNQEEMRTDYAIKIPFALGIIATRS 312
           G    E Q +K+AA+E+ WH+  +       +FG+PN E  R DY + IP    +I T S
Sbjct: 239 GLNTLEHQPMKVAAMEAHWHSDGDGNGVPLVVFGVPNAEAERNDYEVAIPRLGSLILTHS 298

Query: 313 LDEQVVGLRDLRDEHVERIRTGIYAYDLLERLRAGEKTPENMAAFDEVKHDLGYGLLLKR 372
           LD ++  L  +  E    +    +A+    R+  G                LG  +L+  
Sbjct: 299 LDGEIAPLTSVPREERPPVAPVFFAF----RIMVG----------------LGMAMLVLA 338

Query: 373 YTDKVTDATEEQIQAAADDSIPTVWPLFWSFRIMVACGFIMLVVFGAAFIQTCRQKIEQK 432
           +   +      ++ A          PL  ++ +M+  GFI LV                 
Sbjct: 339 WISAIA-WWRGRLHAR---------PLIIAWNLMLPAGFIALV----------------- 371

Query: 433 KWVLKAALFSIPLPWIAVETGWFVAEYGRQPWAVGEILPVNVAASALSAGEIITSMLAIL 492
                               GWFV E GRQP+ V  +L    A    S   +  S+   L
Sbjct: 372 -------------------AGWFVTEIGRQPYVVYGLLRTADAMGPQSTAMVAVSLAVYL 412

Query: 493 ALYTIFLIAEVYLMVKFTRKGP 514
           A Y       ++ + K  R GP
Sbjct: 413 AGYAFVFGWGIWYLAKLIRTGP 434