Pairwise Alignments

Query, 541 a.a., cytochrome d terminal oxidase subunit 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 465 a.a., putative Cytochrome bd2, subunit I from Xanthomonas campestris pv. campestris strain 8004

 Score =  209 bits (532), Expect = 2e-58
 Identities = 108/308 (35%), Positives = 165/308 (53%), Gaps = 4/308 (1%)

Query: 15  IDVVDLSRLQFALTAMYHFLFVPLTLGMAFLLAIMESLYVMTDKQIYKDMTKFWGKLFGI 74
           +D + LSR+QF     +H LF   T+G++ LLA +E  ++ T   +++++  FW K+F +
Sbjct: 1   MDALLLSRIQFGFVIAFHVLFPAFTIGLSSLLAFLEWRWLRTRLPVWRELYFFWQKIFAV 60

Query: 75  NFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEALVAFFLESTFVGLFFFGWDRL 134
           +F +GV +G+ M FQFG NW   S   G + G  L+ E L AFFLE++F+G+  FGW R+
Sbjct: 61  SFGMGVVSGIVMAFQFGANWPELSRIAGSVIGPLLSYEVLTAFFLEASFLGVMMFGWGRI 120

Query: 135 SKRQHLVVTWLVALGSNFSALWILVANGWMQNPVGSEFNFETMRMEMVSFADVVLNPVAQ 194
           S+R H   T +VALG+ FS  WIL +N W+Q P G  +      +  V +  ++ NP   
Sbjct: 121 SERLHFFATCMVALGTLFSTFWILSSNSWLQTPAG--YEVVNGIVHPVDWLKIIFNPSFP 178

Query: 195 VKFVHTVAAGYTTGAMFILGISAYYLLKGRDVAFARRSFAIAASFGMASVLSVIVLGDES 254
            +  H     + T    +  + A+YL +G       R   +A +F   +V   I +GD  
Sbjct: 179 YRLAHMALGSFITTCFVVGAVGAWYLHRGVHREAGLRMLKLAVAFAAITVPLQIFVGDMH 238

Query: 255 GYELGEVQRVKLAAIESEWHTEPAPAAFTL--FGIPNQEEMRTDYAIKIPFALGIIATRS 312
           G    E Q +K+AA+E+ WH E     F L  F +PN  + R DY I IP    +I T  
Sbjct: 239 GLNTLEHQPMKIAAVEAHWHDEAPGEGFPLVVFAVPNAAKERNDYEIAIPRLGSLILTHR 298

Query: 313 LDEQVVGL 320
           LD ++  L
Sbjct: 299 LDGRIAPL 306



 Score = 72.0 bits (175), Expect = 5e-17
 Identities = 42/122 (34%), Positives = 64/122 (52%)

Query: 394 PTVWPLFWSFRIMVACGFIMLVVFGAAFIQTCRQKIEQKKWVLKAALFSIPLPWIAVETG 453
           P V P+F++FRIMV  G +MLVV   +     R K+ Q +W+L    + +P  +IA+ +G
Sbjct: 315 PPVLPVFFAFRIMVGLGSLMLVVAWVSAFAWWRGKLVQWRWLLATWRWMLPSGFIALVSG 374

Query: 454 WFVAEYGRQPWAVGEILPVNVAASALSAGEIITSMLAILALYTIFLIAEVYLMVKFTRKG 513
           WFV E GRQP+ V  +L    A    S      S+   +A Y       ++ +VK  + G
Sbjct: 375 WFVTEMGRQPYVVYGLLRTADAVGPQSTLMTAISLAVYVAGYAFVFGWGIWYLVKIGKLG 434

Query: 514 PS 515
           P+
Sbjct: 435 PT 436