Pairwise Alignments

Query, 541 a.a., cytochrome d terminal oxidase subunit 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 479 a.a., cytochrome bd quinol oxidase subunit 1 apoprotein from Pseudomonas syringae pv. syringae B728a

 Score =  243 bits (619), Expect = 2e-68
 Identities = 123/315 (39%), Positives = 183/315 (58%), Gaps = 7/315 (2%)

Query: 15  IDVVDLSRLQFALTAMYHFLFVPLTLGMAFLLAIMESLYVMTDKQIYKDMTKFWGKLFGI 74
           ++ +DL+R+QFA T  +H LF  +T+G+A  LA++E L++ T   +Y+D+  FW K+F +
Sbjct: 4   LEAIDLARIQFAFTISFHILFPAITIGLASYLAVLEGLWLKTRDDVYRDLYHFWSKIFAV 63

Query: 75  NFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEALVAFFLESTFVGLFFFGWDRL 134
           NF +GV +GL M +QFGTNWS +S + G + G  L  E L AFFLE+ F+G+  FGW+R+
Sbjct: 64  NFGMGVVSGLVMAYQFGTNWSRFSDFAGAVTGPLLTYEVLTAFFLEAGFLGVMLFGWNRV 123

Query: 135 SKRQHLVVTWLVALGSNFSALWILVANGWMQNPVGSEFNFETMRMEMVSFADVVLNPVAQ 194
            +  H   T +VA+G+  S  WIL +N WMQ P G  F     R+    +  VV NP   
Sbjct: 124 GRNLHFFSTVMVAIGTLISTFWILSSNSWMQTPQG--FEIIDGRVIPTDWFAVVFNPSFP 181

Query: 195 VKFVHTVAAGYTTGAMFILGISAYYLLKGRDVAFARRSFAIAASFGMASVLSVIVLGDES 254
            +  H   A +   A F+   +A++LL+GRD    R+  ++A    +       V+GD  
Sbjct: 182 YRLTHMAIAAFVATAFFVGSSAAWHLLRGRDTPAVRKMLSMAMWMALLVAPVQAVVGDFH 241

Query: 255 GYELGEVQRVKLAAIESEWHT---EPAPAAFTLFGIPNQEEMRTDYAIKIPFALGIIATR 311
           G    + Q  K+AAIE  W     EP P    LFGIP+ +E RT YA++IP+   +I T 
Sbjct: 242 GLNTLKHQPAKIAAIEGHWENVGDEPTP--LILFGIPDMKEERTKYAVEIPYLGSLILTH 299

Query: 312 SLDEQVVGLRDLRDE 326
           SLD+QV  L++ + E
Sbjct: 300 SLDKQVPALKEFKPE 314