Pairwise Alignments

Query, 541 a.a., cytochrome d terminal oxidase subunit 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 476 a.a., Cytochrome bd ubiquinol oxidase, subunit I (NCBI) from Rhodospirillum rubrum S1H

 Score =  208 bits (529), Expect = 4e-58
 Identities = 114/316 (36%), Positives = 170/316 (53%), Gaps = 12/316 (3%)

Query: 16  DVVDLSRLQFALTAMYHFLFVPLTLGMAFLLAIMESLYVMTDKQIYKDMTKFWGKLFGIN 75
           D   L+R+QFA T  +H +F   T+G+A  LA++E+ +++T ++++ D+ K W ++F + 
Sbjct: 7   DATLLARIQFAFTVSFHIIFPAFTIGLASYLAVLEATWLITKRRVFLDLYKHWVRVFALT 66

Query: 76  FALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEALVAFFLESTFVGLFFFGWDRLS 135
           F +GV +GL M +QFGTNW  ++   G I G  +  E L AFFLE+ F+G+  FG  R+ 
Sbjct: 67  FGMGVVSGLVMSYQFGTNWGPFAKATGSILGPLMGYEVLTAFFLEAGFLGVMLFGLTRVG 126

Query: 136 KRQHLVVTWLVALGSNFSALWILVANGWMQNPVGSEFNFETMRMEMVSFADVVLNPVAQV 195
            R H   T +VA+G+  SA WIL AN WM  P G        R     + ++V NP    
Sbjct: 127 PRLHFFATLMVAVGTLISAFWILAANSWMHTPTGHILENGIFRPG--DWMEIVFNPSFPY 184

Query: 196 KFVHTVAAGYTTGAMFILGISAYYLLKGRDVAFARRS--------FAIAASFGMASVLSV 247
           + VH V A Y T A+ +   +A  LL  R     R           A A + GM ++ + 
Sbjct: 185 RLVHMVTAAYLTTALVVGAAAARRLLLLRKSGEGRNDPGKGEASRLAFAMAMGMIALTAP 244

Query: 248 I--VLGDESGYELGEVQRVKLAAIESEWHTEPAPAAFTLFGIPNQEEMRTDYAIKIPFAL 305
           +   LGD  G    E Q  K+AA+E  W    +PA   LFG+P+ E   T YA++IP+  
Sbjct: 245 LQAFLGDLHGLNTLEHQPAKIAAMEGHWQETISPAPLILFGLPDAEAETTRYAVEIPYLG 304

Query: 306 GIIATRSLDEQVVGLR 321
            +I T SLD  + GL+
Sbjct: 305 SLILTHSLDGALQGLK 320



 Score = 62.8 bits (151), Expect = 3e-14
 Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 2/117 (1%)

Query: 391 DSIPTVWPLFWSFRIMVACGFIMLVVFGAAFIQTCRQKIEQKKWVLKAALFSIPLPWIAV 450
           D  P V P FWSFR+MV  G +M+ +   A     R ++     + + AL   P  +IAV
Sbjct: 326 DRPPVVIP-FWSFRVMVGLGLLMIALGALAVWARLRGRLYDSPALYRFALLMGPAGFIAV 384

Query: 451 ETGWFVAEYGRQPWAVGEILPVNVAASALSAGEIITSMLAILALY-TIFLIAEVYLM 506
             GW   E GRQP+ V  ++  +   S + A  +  S+LA + +Y  +F +   YL+
Sbjct: 385 LAGWVTTEVGRQPFVVYGLMRTSDMVSPIGAPGVAASLLAFIVVYFAVFGVGIRYLL 441