Pairwise Alignments

Query, 541 a.a., cytochrome d terminal oxidase subunit 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 474 a.a., cytochrome d ubiquinol oxidase subunit 1 from Phaeobacter inhibens DSM 17395

 Score =  214 bits (544), Expect = 8e-60
 Identities = 141/501 (28%), Positives = 224/501 (44%), Gaps = 66/501 (13%)

Query: 20  LSRLQFALTAMYHFLFVPLTLGMAFLLAIMESLYVMTDKQIYKDMTKFWGKLFGINFALG 79
           L+R+QFA T  +H +F   ++G+A  LA++ + ++ T  + Y  + ++W K+F + F +G
Sbjct: 10  LARMQFAFTVSFHIIFPAFSIGLASYLAVLNAQWLRTRDETYYTLFEYWKKIFAVAFGMG 69

Query: 80  VATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEALVAFFLESTFVGLFFFGWDRLSKRQH 139
           V +G+ M +QFGTNWS +S   G + G  +A E L AFFLE+ F+G+  FG  R+  R H
Sbjct: 70  VVSGIVMSYQFGTNWSVFSDKTGPVLGPLMAYEVLSAFFLEAGFLGIMLFGRARVGDRLH 129

Query: 140 LVVTWLVALGSNFSALWILVANGWMQNPVGSEFNFETMRMEMVSFADVVLNPVAQVKFVH 199
           +  T +VA G+  SA WIL  N WMQ P G   N E  +     +  +V NP    + VH
Sbjct: 130 MFATAMVAFGTLMSATWILSVNSWMQTPAGYSIN-EVGQFVPEDWWQIVFNPSFPYRLVH 188

Query: 200 TVAAGYTTGAMFILGISAYYLLKGRDVAFARRSFAIAASFGMASVLSVIVLGDESGYELG 259
            V A + T A+ + G+ A +LL+ +  A ARR F++A    +      I  GD  G    
Sbjct: 189 MVLAAFLTTALVVGGVGALHLLRDKTDAAARRMFSMAMWMLVVVAPMQIFAGDMHGLNTL 248

Query: 260 EVQRVKLAAIESEWHTEPAPAAFTLFGIPNQEEMRTDYAIKIPFALGIIATRSLDEQVVG 319
           E Q  K+ A+E  + + P  A   LFG+PN E    DYAI+IP    +I    L+  + G
Sbjct: 249 EHQPAKVMAMEGHYDSHPEGAPLILFGLPNAETKTIDYAIEIPKLSSLILKHDLNAPLAG 308

Query: 320 LRDLRDEHVERIRTGIYAYDLLERLRAGEKTPENMAAFDEVKHDLGYGLLLKRYTDKVTD 379
           L  + D     +    +++ +             M         LG   L  R   ++ D
Sbjct: 309 LDTIPDADEPPVAIVFWSFRV-------------MVGLGFAMAGLGLWSLWGRLRGRLHD 355

Query: 380 ATEEQIQAAADDSIPTVWPLFWSFRIMVACGFIMLVVFGAAFIQTCRQKIEQKKWVLKAA 439
           +                    W  R  +A G +  V   A +I T               
Sbjct: 356 SR-------------------WLHRASIAMGPMGFVAVLAGWITT--------------- 381

Query: 440 LFSIPLPWIAVETGWFVAEYGRQPWAVGEILPVNVAASALSAGEIITSMLAILALYTIFL 499
                             E GRQP+ V  +L  + + + +SA  +  S+ A + +Y    
Sbjct: 382 ------------------EVGRQPFTVYGLLRTSDSLAPVSAPAVAASLTAFVIVYFFIF 423

Query: 500 IAEVYLMVKFTRKGPSSLKTG 520
            A  + +++   K P++   G
Sbjct: 424 GAGTFYILRMMNKAPATRNLG 444