Pairwise Alignments

Query, 541 a.a., cytochrome d terminal oxidase subunit 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 518 a.a., cytochrome bd ubiquinol oxidase, subunit I (RefSeq) from Shewanella loihica PV-4

 Score =  815 bits (2105), Expect = 0.0
 Identities = 394/510 (77%), Positives = 449/510 (88%)

Query: 16  DVVDLSRLQFALTAMYHFLFVPLTLGMAFLLAIMESLYVMTDKQIYKDMTKFWGKLFGIN 75
           +VV+LSRLQFALTAMYHFLFVPLTLG+AFLLAIMESLYVMT+KQIYKDMTKFWGKLFGIN
Sbjct: 5   EVVELSRLQFALTAMYHFLFVPLTLGLAFLLAIMESLYVMTNKQIYKDMTKFWGKLFGIN 64

Query: 76  FALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEALVAFFLESTFVGLFFFGWDRLS 135
           FALGV TGL MEFQFGTNWSYYSHYVGDIFGAPLAIE L+AFFLEST VG+FFFGWDR S
Sbjct: 65  FALGVTTGLAMEFQFGTNWSYYSHYVGDIFGAPLAIEGLMAFFLESTLVGMFFFGWDRFS 124

Query: 136 KRQHLVVTWLVALGSNFSALWILVANGWMQNPVGSEFNFETMRMEMVSFADVVLNPVAQV 195
           KRQHL VTWLVALGSN SALWILVANGWMQNPVGS FN+ETMRMEM SFA+V+ NPVAQV
Sbjct: 125 KRQHLAVTWLVALGSNMSALWILVANGWMQNPVGSVFNYETMRMEMTSFAEVLFNPVAQV 184

Query: 196 KFVHTVAAGYTTGAMFILGISAYYLLKGRDVAFARRSFAIAASFGMASVLSVIVLGDESG 255
           KFVHTVA+GY  GAMF+L IS+YY+LK RD+ FARRSFAIAASFGMAS+LSVIVLGDESG
Sbjct: 185 KFVHTVASGYVAGAMFVLAISSYYILKKRDLPFARRSFAIAASFGMASILSVIVLGDESG 244

Query: 256 YELGEVQRVKLAAIESEWHTEPAPAAFTLFGIPNQEEMRTDYAIKIPFALGIIATRSLDE 315
           Y++GE QRVKLAAIE+EWHTEPAPAAFT  G PNQE M TDYAIKIP+A+GIIATRS+DE
Sbjct: 245 YKVGEAQRVKLAAIEAEWHTEPAPAAFTAVGFPNQETMHTDYAIKIPYAMGIIATRSIDE 304

Query: 316 QVVGLRDLRDEHVERIRTGIYAYDLLERLRAGEKTPENMAAFDEVKHDLGYGLLLKRYTD 375
           +V G+RDL  EH ERIR G+ AY +L  LRAG++TPE  AAF+E K DLGYGLLLKRYTD
Sbjct: 305 EVTGIRDLIVEHEERIRNGMKAYAMLTELRAGKETPELRAAFEEAKVDLGYGLLLKRYTD 364

Query: 376 KVTDATEEQIQAAADDSIPTVWPLFWSFRIMVACGFIMLVVFGAAFIQTCRQKIEQKKWV 435
            V DATEEQI+AAA DSIP+V P+FWSFR+MV  G +ML VF AAF Q+ R +IE+K WV
Sbjct: 365 NVVDATEEQIKAAAKDSIPSVAPMFWSFRVMVGLGVVMLFVFAAAFWQSTRHQIEEKPWV 424

Query: 436 LKAALFSIPLPWIAVETGWFVAEYGRQPWAVGEILPVNVAASALSAGEIITSMLAILALY 495
           LKAAL+S+PLPWIA+E GWFVAEYGRQPW + E+LP  ++AS+L+A ++  S+++I   Y
Sbjct: 425 LKAALYSLPLPWIAIECGWFVAEYGRQPWTISEVLPTFMSASSLTAADLWFSIISITLFY 484

Query: 496 TIFLIAEVYLMVKFTRKGPSSLKTGRYHFE 525
           T+ L+ E++LM+KF RKGPSSLKTGRYHFE
Sbjct: 485 TVLLVIELFLMIKFARKGPSSLKTGRYHFE 514