Pairwise Alignments

Query, 541 a.a., cytochrome d terminal oxidase subunit 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 433 a.a., cytochrome bd ubiquinol oxidase subunit I (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  301 bits (770), Expect = 4e-86
 Identities = 154/313 (49%), Positives = 205/313 (65%), Gaps = 4/313 (1%)

Query: 15  IDVVDLSRLQFALTAMYHFLFVPLTLGMAFLLAIMESLYVMTDKQIYKDMTKFWGKLFGI 74
           +DVV LSRLQFA+   +HF+FVPLTLG++ L+A+M+++Y  T  + YK M KFWGKLF I
Sbjct: 1   MDVVMLSRLQFAVAVFFHFIFVPLTLGLSVLIAVMQTIYYRTGNETYKRMAKFWGKLFLI 60

Query: 75  NFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEALVAFFLESTFVGLFFFGWDRL 134
           NF LGV TG+T+EFQFGTNWS YS YVGDIFG+ LAIEA +AFFLESTF+ ++ FGW+R+
Sbjct: 61  NFTLGVVTGITLEFQFGTNWSRYSEYVGDIFGSLLAIEATLAFFLESTFLAVWVFGWERV 120

Query: 135 SKRQHLVVTWLVALGSNFSALWILVANGWMQNPVGSEFNFETMRMEMVSFADVVLNPVAQ 194
           SK+ HL   W VA  SN S LWI++ANGWMQNPVG  +     R E+ +F  V+ NP A 
Sbjct: 121 SKKMHLFAIWAVAFASNMSGLWIILANGWMQNPVG--YVIRNNRAELDNFFTVLSNPYAW 178

Query: 195 VKFVHTVAAGYTTGAMFILGISAYYLLKGRDVAFARRSFAIAASFGMASVLSVIVLGDES 254
            +F H + A +     F+LG+SA++LL+  +  F  RSF +AA F +A  L V + G   
Sbjct: 179 GQFFHNMFASWMLAGFFVLGVSAWHLLRRNEEDFFNRSFKLAAGFTLALALLVALQGHNH 238

Query: 255 GYELGEVQRVKLAAIESEWHTEPAPAAFTLFGIPNQE-EMRTDYAIKIPFALGIIATRSL 313
           G  +  +Q  KLAA+ES W T+ + A   L  +PN+  E     A  IP  L ++A    
Sbjct: 239 GNTVARLQPAKLAAMESHWETQKS-APMYLLAVPNESAEGNAIQAFGIPGVLSLLAFNDP 297

Query: 314 DEQVVGLRDLRDE 326
             +V GL+D   E
Sbjct: 298 SAEVKGLKDFPKE 310



 Score =  102 bits (255), Expect = 2e-26
 Identities = 50/123 (40%), Positives = 79/123 (64%), Gaps = 2/123 (1%)

Query: 394 PTVWPLFWSFRIMVACGFIMLVVFGAAFIQTCRQKIEQKKWVLKAALFSIPLPWIAVETG 453
           P V   F +FR+MV  G +  ++ GAAF+   R +++ K W+LKA  ++IPLP++A+  G
Sbjct: 313 PPVLLTFLNFRVMVGLGTLFPLLAGAAFL--FRNRLQDKPWLLKALPWAIPLPYLAIMAG 370

Query: 454 WFVAEYGRQPWAVGEILPVNVAASALSAGEIITSMLAILALYTIFLIAEVYLMVKFTRKG 513
           W VAE GRQPW V  ++    A S + A  +  S+LA  A+YT+  + ++YL+ K+ RKG
Sbjct: 371 WAVAEIGRQPWIVYGMMRTTDAVSPVPASSVAVSLLAFGAVYTLLGVLDIYLLRKYARKG 430

Query: 514 PSS 516
           P++
Sbjct: 431 PAA 433