Pairwise Alignments

Query, 541 a.a., cytochrome d terminal oxidase subunit 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 464 a.a., cytochrome bd ubiquinol oxidase subunit I (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  209 bits (533), Expect = 1e-58
 Identities = 111/315 (35%), Positives = 167/315 (53%), Gaps = 2/315 (0%)

Query: 15  IDVVDLSRLQFALTAMYHFLFVPLTLGMAFLLAIMESLYVMTDKQIYKDMTKFWGKLFGI 74
           +D + LSR+QF     +H LF  +T+ + ++L   +  +  T    + +  +FW K+F +
Sbjct: 1   MDTLILSRIQFGANISFHILFPTITIALGWVLLFFKLRFQATGDGKWMEAYRFWVKVFAL 60

Query: 75  NFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEALVAFFLESTFVGLFFFGWDRL 134
           +FA+GV +G+TM FQFGTNW  +  +VG+I G  LA E + AFFLE+ F+G+  FG  R+
Sbjct: 61  SFAMGVVSGITMSFQFGTNWPGFMEHVGNIAGPLLAYEVMTAFFLEAVFLGIMLFGVSRV 120

Query: 135 SKRQHLVVTWLVALGSNFSALWILVANGWMQNPVGSEFNFETMRMEMVSFADVVLNPVAQ 194
               H + T+LVA G+  SA WILV N WM  P G E           ++ +++ NP   
Sbjct: 121 PPWLHTLATFLVAFGTTMSAFWILVLNSWMHTPQGYEIRDGV--AYATNWLEIIFNPSLP 178

Query: 195 VKFVHTVAAGYTTGAMFILGISAYYLLKGRDVAFARRSFAIAASFGMASVLSVIVLGDES 254
            +F HT+ A   T A  + G+SA+  L+G      R +     + G   +   I +GD  
Sbjct: 179 YRFSHTLLASGLTVAFLLAGLSAFRWLRGDRSDGVRAAMRTGVTLGALLIPVQIFVGDMH 238

Query: 255 GYELGEVQRVKLAAIESEWHTEPAPAAFTLFGIPNQEEMRTDYAIKIPFALGIIATRSLD 314
           G    E Q  K+AA+E  W  + +P    LF +PN E    D+ I IP+   +I T SLD
Sbjct: 239 GLNTLEHQPAKVAAMEGHWDGDKSPVPLVLFALPNAETRENDFEIAIPYLGSLILTHSLD 298

Query: 315 EQVVGLRDLRDEHVE 329
            ++ GL D   E  E
Sbjct: 299 GKIPGLNDFVTEDGE 313



 Score = 69.7 bits (169), Expect = 2e-16
 Identities = 45/130 (34%), Positives = 66/130 (50%), Gaps = 6/130 (4%)

Query: 394 PTVWPLFWSFRIMVACGFIMLVVFGAA--FIQTCRQKIEQKKWVLKAALFSIPLPWIAVE 451
           P V  +FWSFR+MVA G  MLV+  AA  F++  R      K +L   +      WIA  
Sbjct: 317 PPVAKVFWSFRVMVATGMAMLVMSWAAMWFMRRGRGIEGLPKPMLYGFVAMGFSGWIATL 376

Query: 452 TGWFVAEYGRQPWAVGEILPVNVAASALSAGEIITSMLAILALYTIFLIAEV----YLMV 507
            GW+  E GRQPW V  +L    A + + AG ++ ++LA LA+Y   +   +    YL  
Sbjct: 377 AGWYTTEIGRQPWLVDGVLRTADAVADVPAGMVLGTLLAYLAVYAALIFCYISVLTYLAA 436

Query: 508 KFTRKGPSSL 517
           K  +  P+ +
Sbjct: 437 KAAKGEPTRI 446