Pairwise Alignments

Query, 541 a.a., cytochrome d terminal oxidase subunit 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 462 a.a., membrane protein from Burkholderia phytofirmans PsJN

 Score =  233 bits (593), Expect = 2e-65
 Identities = 119/313 (38%), Positives = 177/313 (56%), Gaps = 2/313 (0%)

Query: 14  MIDVVDLSRLQFALTAMYHFLFVPLTLGMAFLLAIMESLYVMTDKQIYKDMTKFWGKLFG 73
           + D   L+RLQFA T  +H +F  +++GMA  LA++E  +++T  + YKDM  FW ++F 
Sbjct: 3   IFDAFHLARLQFAFTVSFHIVFPAISIGMASFLAVLEWRFLLTGDKAYKDMYLFWSRIFA 62

Query: 74  INFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEALVAFFLESTFVGLFFFGWDR 133
           + F +GV +G+ M ++FGTNWS +S   G+I G  L  E L AFFLE+ F+G+  FGW R
Sbjct: 63  VGFGMGVVSGVVMAYEFGTNWSGFSLVAGNITGPLLTYEVLTAFFLEAGFLGIMLFGWHR 122

Query: 134 LSKRQHLVVTWLVALGSNFSALWILVANGWMQNPVGSEFNFETMRMEMVSFADVVLNPVA 193
           +S R H   T++VA+G+  S  WIL +N +MQ P G  F  E  R+  V +  V+ NP  
Sbjct: 123 VSPRAHFFATFMVAVGTLISTFWILASNSFMQTPQG--FAMENGRIVPVDWFKVIFNPSF 180

Query: 194 QVKFVHTVAAGYTTGAMFILGISAYYLLKGRDVAFARRSFAIAASFGMASVLSVIVLGDE 253
             +  H   A +   A  +    A++LL GR     +RSF++A    +      I +GD 
Sbjct: 181 PFRLAHMTIAAFIVAAFIVAACGAWHLLHGRRDVPVKRSFSMALWMLLVLTPIQIFVGDA 240

Query: 254 SGYELGEVQRVKLAAIESEWHTEPAPAAFTLFGIPNQEEMRTDYAIKIPFALGIIATRSL 313
            G    E Q VK+AAIE  W TE    A  LFG+P+ +   T YAI++P    +I T S 
Sbjct: 241 HGLNTREYQPVKIAAIEGLWETEHGGTALNLFGLPDMDAEVTRYAIQVPHLGSLILTHSW 300

Query: 314 DEQVVGLRDLRDE 326
           D ++ G+++   E
Sbjct: 301 DGEIRGMKEFPPE 313



 Score = 63.2 bits (152), Expect = 2e-14
 Identities = 32/118 (27%), Positives = 57/118 (48%)

Query: 399 LFWSFRIMVACGFIMLVVFGAAFIQTCRQKIEQKKWVLKAALFSIPLPWIAVETGWFVAE 458
           +FW+FRIM   G +ML+      +     ++ +  W     L   P   +A+  GW   E
Sbjct: 321 VFWTFRIMAGLGMLMLLTAVVGLLLRRNGRLYEADWYQWFVLCMGPSGIVALLAGWITTE 380

Query: 459 YGRQPWAVGEILPVNVAASALSAGEIITSMLAILALYTIFLIAEVYLMVKFTRKGPSS 516
            GRQPW V  ++    + S + + +   ++L ++ +Y +     VY M+K  + GPS+
Sbjct: 381 VGRQPWTVYGVVRTVDSVSPIGSQQAGVTLLMLVIVYFLVFGTGVYYMLKMMKAGPSA 438