Pairwise Alignments

Query, 541 a.a., cytochrome d terminal oxidase subunit 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 462 a.a., membrane protein from Burkholderia phytofirmans PsJN

 Score =  223 bits (568), Expect = 1e-62
 Identities = 115/313 (36%), Positives = 173/313 (55%), Gaps = 2/313 (0%)

Query: 14  MIDVVDLSRLQFALTAMYHFLFVPLTLGMAFLLAIMESLYVMTDKQIYKDMTKFWGKLFG 73
           + D   L+RLQFA T  +H +F  +++GMA  LA++E   ++T    YKDM +FW ++F 
Sbjct: 3   IFDAFHLARLQFAFTVSFHIVFPAISIGMASFLAVLEWRLLLTGDAAYKDMYRFWSRIFA 62

Query: 74  INFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEALVAFFLESTFVGLFFFGWDR 133
           + F +GV +G+ M ++FGTNWS +S   G+I G  L  E L AFFLE+ F+G+  FGW+R
Sbjct: 63  VGFGMGVVSGVVMAYEFGTNWSGFSTVAGNITGPLLTYEVLTAFFLEAGFLGVMLFGWNR 122

Query: 134 LSKRQHLVVTWLVALGSNFSALWILVANGWMQNPVGSEFNFETMRMEMVSFADVVLNPVA 193
           +S + H   T +VA+G+  S  WIL +N +MQ P G  +  +  R+  V +  V+ NP  
Sbjct: 123 VSPKAHFFATLMVAIGTLISTFWILASNSFMQTPQG--YAIQNGRIVPVDWWKVIFNPSF 180

Query: 194 QVKFVHTVAAGYTTGAMFILGISAYYLLKGRDVAFARRSFAIAASFGMASVLSVIVLGDE 253
             +  H   A +   A  +    A++LL GR     +RSF++A    +      I +GD 
Sbjct: 181 PFRLAHMTIAAFIVAAFIVAACGAWHLLHGRRDVPVKRSFSMALWILLLLAPVQIFVGDA 240

Query: 254 SGYELGEVQRVKLAAIESEWHTEPAPAAFTLFGIPNQEEMRTDYAIKIPFALGIIATRSL 313
            G    E Q  K+AAIE  W TE    A  L G+P+     T YAIK+P    +I T S 
Sbjct: 241 HGLNTREYQPAKIAAIEGLWETEHGGTALNLVGLPDMNAEVTRYAIKVPHLGSLILTHSW 300

Query: 314 DEQVVGLRDLRDE 326
           + ++ GL++   E
Sbjct: 301 NGEIRGLKEFPPE 313



 Score = 65.5 bits (158), Expect = 4e-15
 Identities = 33/118 (27%), Positives = 57/118 (48%)

Query: 399 LFWSFRIMVACGFIMLVVFGAAFIQTCRQKIEQKKWVLKAALFSIPLPWIAVETGWFVAE 458
           +FW+FR+M   G +ML+      I     ++ + +W         P   +A+  GW   E
Sbjct: 321 IFWTFRVMAGLGMLMLLTAVLGLILRRGGRLYEARWFQWFVFCMGPSGILALLAGWITTE 380

Query: 459 YGRQPWAVGEILPVNVAASALSAGEIITSMLAILALYTIFLIAEVYLMVKFTRKGPSS 516
            GRQPW V  +L    + S + + +   S+L  + +Y +     +Y M+K  +KGP+S
Sbjct: 381 VGRQPWTVYGVLRTADSISPIGSQQAGVSLLIFVIVYFLVFGTGIYYMLKMMKKGPAS 438