Pairwise Alignments

Query, 541 a.a., cytochrome d terminal oxidase subunit 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 446 a.a., cytochrome bd ubiquinol oxidase, subunit I (RefSeq) from Shewanella sp. ANA-3

 Score =  241 bits (614), Expect = 5e-68
 Identities = 151/501 (30%), Positives = 239/501 (47%), Gaps = 70/501 (13%)

Query: 16  DVVDLSRLQFALTAMYHFLFVPLTLGMAFLLAIMESLYVMTDKQIYKDMTKFWGKLFGIN 75
           D   L+R+QFA T  +H +F  +T+G+A  LA++E L++ T+ QIY+ + +FW K+F IN
Sbjct: 5   DATVLARIQFAFTVSFHIIFPAITIGLATYLAVLEGLWLKTNNQIYQQLYQFWVKIFAIN 64

Query: 76  FALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEALVAFFLESTFVGLFFFGWDRLS 135
           F +GV +G+ M +QFGT+WS +S + G + G  L  E L AFFLE+ F+G+  FG +++ 
Sbjct: 65  FGMGVVSGIVMAYQFGTHWSGFSAFAGSVTGPLLTYEVLTAFFLEAGFLGVMLFGQNKVG 124

Query: 136 KRQHLVVTWLVALGSNFSALWILVANGWMQNPVGSEFNFETMRMEMVSFADVVLNPVAQV 195
           K+ H   T +VA G+  S  WIL +N WM  P G E      R+  + +  +V NP    
Sbjct: 125 KKLHFFATCMVATGTVISTFWILASNSWMHTPQGVEIIDN--RVVPIDWWQIVFNPSFPY 182

Query: 196 KFVHTVAAGYTTGAMFILGISAYYLLKGRDVAFARRSFAIAASFGMASVLSVIVLGDESG 255
           +  H   A + + A F+   +A++LLKG D    R+  ++A    +       V+GD  G
Sbjct: 183 RLTHMTVAAFLSSAFFVGASAAWHLLKGNDTPAIRKMLSMAMWMALIVAPLQAVIGDFHG 242

Query: 256 YELGEVQRVKLAAIESEWHTE-PAPAAFTLFGIPNQEEMRTDYAIKIPFALGIIATRSLD 314
               E Q VK+AA+E  W  E   P    LF +P+ ++    +++               
Sbjct: 243 LNTLEYQPVKIAAMEGHWRNEGDEPTPLILFAMPDMDKQTNHFSL--------------- 287

Query: 315 EQVVGLRDLRDEHVERIRTGIYAYDLLERLRAGEKTPENMAAFDEVKHDLGYGLLLKRYT 374
            ++ GL  L                                    +KHD+         T
Sbjct: 288 -EIPGLASLI-----------------------------------LKHDI---------T 302

Query: 375 DKVTDATEEQIQAAADDSIPTVWPLFWSFRIMVACGFIMLVVFGAAFIQTCRQKIEQKKW 434
            +V   TE      A+D  P V  +FWSFR+MV  G +M++    +     +Q +   + 
Sbjct: 303 KQVPALTE----FPAEDW-PNVSLVFWSFRVMVGLGVLMILAGVWSLYLRRKQTLYSNRL 357

Query: 435 VLKAALFSIPLPWIAVETGWFVAEYGRQPWAVGEILPVNVAASALSAGEI-ITSMLAILA 493
            L+  L   P   IA   GWF  E GRQPW +  ++    A S+ S   + I+ M+ ++ 
Sbjct: 358 FLRLVLLLGPAGLIATLAGWFTTELGRQPWVIQGLMRTQDAVSSHSVTHLSISLMMFVIC 417

Query: 494 LYTIFLIAEVYLMVKFTRKGP 514
            + IF +   Y+M +   KGP
Sbjct: 418 YFGIFGVGYRYMM-RLISKGP 437