Pairwise Alignments

Query, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 335 a.a., putative Cytochrome bd2, subunit II from Pseudomonas fluorescens FW300-N2E2

 Score =  157 bits (397), Expect = 4e-43
 Identities = 108/362 (29%), Positives = 165/362 (45%), Gaps = 41/362 (11%)

Query: 7   LRLIWWVLIGVLLVGFAITDGFDMGVGALVPIIGKNDNERRVMINSIAPHWDGNQVWLIT 66
           L LIW V+I   ++ + I DGFD+G+G L P + K + +R VM+N++AP WDGN+ WL+ 
Sbjct: 5   LPLIWAVVIIFGIMMYVIMDGFDLGIGILFPFV-KGERDRDVMMNTVAPVWDGNETWLVL 63

Query: 67  AGGALFAAWPLVYATSFSGFYLAMIVTLAALWLRPVGLDYRSKIESTKWRNNWDLAISAS 126
            G  LF A+PL Y+   S  YL +I+ L  L  R V  ++R K ++ K R+ WD A    
Sbjct: 64  GGAGLFGAFPLAYSVVLSALYLPLILMLIGLIFRGVAFEFRFKAKAEK-RHLWDKAFIGG 122

Query: 127 GFIPPVIFGVAFGNLLQGVPFQLSDFLMPTYHGSFFGLLNPFALLCGLVSLFMTLLQGSA 186
                   GVA G  + G       F+     G   G   PFA+ CGL  +    L G  
Sbjct: 123 SLTATFFQGVALGAFIDGFEVVNRQFV-----GGSLGWFTPFAMFCGLALIAAYALLGCT 177

Query: 187 WLQMKTTSHVHQRARNVAQLTGLLTAVCFVAAGFWVQHIDGYMIVGAIDGNAASNPLNKE 246
           WL MKT   + ++  ++A+    +          W                    PL   
Sbjct: 178 WLIMKTEGKLQEQMHDLARPLAFVVLAVIGIVSIWT-------------------PLAHA 218

Query: 247 VIREAGAWLHN---FEQVPVLWLAPALGVLMPLLSVLASRLDKGGLAFLTSSLGNAGVIF 303
            I      L N   F  VP+L L    G+   +     +      L  +   LG +G+  
Sbjct: 219 DIAARWFTLPNLFWFLPVPILVLVTLYGLFRAVAR--NANYTPFILTLVLIFLGYSGL-- 274

Query: 304 TAGFAMFPFVMPSSLNPAHSLTMWDATSSKLTLELMTVVAVVMVPIILGYTIWSYYKMFG 363
             G +++P ++P S++      +WDA+S   +   M V  + ++P+IL YT WSYY   G
Sbjct: 275 --GISLWPNIVPPSIS------IWDASSPPQSQGFMLVGTLFIIPLILVYTFWSYYVFRG 326

Query: 364 RL 365
           ++
Sbjct: 327 KV 328