Pairwise Alignments

Query, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 335 a.a., cytochrome d oxidase, subunit II (cydB) from Pseudomonas stutzeri RCH2

 Score =  157 bits (397), Expect = 4e-43
 Identities = 116/373 (31%), Positives = 175/373 (46%), Gaps = 63/373 (16%)

Query: 7   LRLIWWVLIGVLLVGFAITDGFDMGVGALVPIIGKNDNERRVMINSIAPHWDGNQVWLIT 66
           L LIW V+I   ++ + + DGFD+GVG L P + ++ ++R VM+N++AP WDGN+ WL+ 
Sbjct: 5   LSLIWAVIIIFGIMMYVVMDGFDLGVGILFPFV-QDSSDRDVMMNTVAPVWDGNETWLVL 63

Query: 67  AGGALFAAWPLVYATSFSGFYLAMIVTLAALWLRPVGLDYRSKIESTKWRNNWDLAISAS 126
            G  LFAA+PL Y+   S  YL +I  L  L  R V  ++R K+   + ++ WD A    
Sbjct: 64  GGAGLFAAFPLAYSVVLSALYLPIIFMLMGLIFRGVAFEFRFKVVRER-QHVWDKAFIGG 122

Query: 127 GFIPPVIFGVAFGNLLQGVPFQLSDFLMPTYHGSFFGLLNPFALLCGLVSLFMTLLQGSA 186
             +     GV  G  + G+P +        Y G     L PF+L CGL  +    L G  
Sbjct: 123 SLVATFFQGVVLGAFISGLPVE-----DRAYAGGALDWLTPFSLFCGLALIVAYALLGCT 177

Query: 187 WLQMKTTSHVHQRARNVAQLTGLLTAVCFVA--AGFWVQHIDGYMIVGAIDGNAASNPLN 244
           WL M+T   + +R  ++     L+ AV  V      W                    PL 
Sbjct: 178 WLMMRTAGDLQRRMHDIG--IPLVWAVLVVTGIVSLW-------------------TPLT 216

Query: 245 KEVIREAGAWLHN---FEQVPVLWLAPALGVL---------MPLLSVLASRLDKGGLAFL 292
              I E    + N   F  VPVL L  A G+L         MP L  LA       L F 
Sbjct: 217 HPDIAERWFSMPNLLYFMPVPVLVLLCAFGLLRSIQRYANYMPFLLTLA-------LIF- 268

Query: 293 TSSLGNAGVIFTAGFAMFPFVMPSSLNPAHSLTMWDATSSKLTLELMTVVAVVMVPIILG 352
              LG +G+    G +++P ++P       S+++W+A +   +     V A++++P+IL 
Sbjct: 269 ---LGYSGL----GISLWPNIIPP------SVSIWEAAAPPQSQGFTLVGALLILPLILM 315

Query: 353 YTIWSYYKMFGRL 365
           YT WSYY   G++
Sbjct: 316 YTAWSYYVFRGKV 328