Pairwise Alignments

Query, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 335 a.a., cytochrome bd quinol oxidase subunit 2 apoprotein from Pseudomonas syringae pv. syringae B728a

 Score =  155 bits (393), Expect = 1e-42
 Identities = 105/365 (28%), Positives = 164/365 (44%), Gaps = 47/365 (12%)

Query: 7   LRLIWWVLIGVLLVGFAITDGFDMGVGALVPIIGKNDNERRVMINSIAPHWDGNQVWLIT 66
           L LIW ++I   ++ + + DGFD+G+G L P + K+ ++R VM+N++AP WDGN+ WL+ 
Sbjct: 5   LPLIWAIIIVFGIMMYVVMDGFDLGIGILFPFM-KDSSDRDVMMNTVAPVWDGNETWLVL 63

Query: 67  AGGALFAAWPLVYATSFSGFYLAMIVTLAALWLRPVGLDYRSKIESTKWRNNWDLAISAS 126
            G ALF A+PL Y+   S  YL ++  L  L  R V  ++R K    K R+ WD A    
Sbjct: 64  GGAALFGAFPLAYSVVLSALYLPLMFMLMGLIFRGVAFEFRFKATELK-RHWWDKAFIGG 122

Query: 127 GFIPPVIFGVAFGNLLQGVPFQLSDFLMPTYHGSFFGLLNPFALLCGLVSLFMTLLQGSA 186
                   GVA G  ++G+P     F      G     L+PF + CGL  +    L G  
Sbjct: 123 SLAATFFQGVALGTYIEGIPVVDRQFA-----GGSLDWLSPFPMFCGLALIVAYALLGCT 177

Query: 187 WLQMKTTSHVHQRARNVAQLTGLLTAVCFVAAGFWVQHIDGYMIVGAIDGNAASNPLNKE 246
           WL MKT   + +   ++A+   L           W                    PL   
Sbjct: 178 WLIMKTEGSLQKAMHDLARPLALAVLAVMGVVSLW-------------------TPLAHA 218

Query: 247 VIREAGAWLHNFEQVPVLWLAPALGVLMPLLSVLASRLDKGG------LAFLTSSLGNAG 300
            I  A  W   F    + W  P   +++  +  L   + +        L  L   LG +G
Sbjct: 219 DI--AHRW---FSMPNLFWFMPVPILVLVTMYSLFKAVARNAHYTPFLLTLLLIFLGYSG 273

Query: 301 VIFTAGFAMFPFVMPSSLNPAHSLTMWDATSSKLTLELMTVVAVVMVPIILGYTIWSYYK 360
           +    G +++P ++P       S+++W A +   +   M V  + ++P ILGYT WSYY 
Sbjct: 274 L----GISLWPNIIPP------SVSIWTAAAPPQSQGFMLVGTLFIIPFILGYTFWSYYV 323

Query: 361 MFGRL 365
             G++
Sbjct: 324 FRGKV 328