Pairwise Alignments

Query, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 333 a.a., Cytochrome bd ubiquinol oxidase, subunit II (NCBI) from Rhodospirillum rubrum S1H

 Score =  157 bits (397), Expect = 4e-43
 Identities = 112/362 (30%), Positives = 172/362 (47%), Gaps = 45/362 (12%)

Query: 7   LRLIWWVLIGVLLVGFAITDGFDMGVGALVPIIGKNDNERRVMINSIAPHWDGNQVWLIT 66
           L LIW +LI   +  + + DGFD+G+G L P +G  D   R M NSIAP WDGN+ WL+ 
Sbjct: 5   LPLIWGMLIAFAVFAYVVLDGFDLGIGILFPFLGGEDERNRAM-NSIAPVWDGNETWLVL 63

Query: 67  AGGALFAAWPLVYATSFSGFYLAMIVTLAALWLRPVGLDYRSKIESTKWRNNWDLAISAS 126
            GG LFAA+P  Y+   + FY  +I  L AL  R V  ++R    + + +  W     A 
Sbjct: 64  GGGGLFAAFPEAYSVLMTAFYAPVIAMLLALVFRGVAFEFR--FMAKRGKRFWTAGFFAG 121

Query: 127 GFIPPVIFGVAFGNLLQGVPFQLSDFLMPTYHGSFFGLLNPFALLCGLVSLFMTLLQGSA 186
             +  +  G+  G  +QG+ F+        Y G +F   +PF+LL G   +    L G+ 
Sbjct: 122 SLMAALCQGMMLGAFVQGIAFEDG-----RYAGGWFDWFSPFSLLTGAAVVCGYSLLGAG 176

Query: 187 WLQMKTTSHVHQRARNVAQLTGLLTAVCFVAAGFWVQHIDGYMIVGAIDGNAASNPLNKE 246
           WL +KT   +   A  +A+L G++T V  VA                    +A  PL   
Sbjct: 177 WLAIKTDGPLADFAFRIARLAGVVTLVAIVAV-------------------SALTPLVAP 217

Query: 247 VIREAGAWLHNFEQVPVLWLAPALGVLMPLLSVLASRLDKGGLAFLTSSLGNAGVIFTA- 305
           +  E   W        +LW APA   ++ L +VL   + +     LT  L   G+  T  
Sbjct: 218 LAAE--RWF----GPQMLWHAPAPIAVVVLGAVLLRAIAR--RRELTLFLSGLGLFATCY 269

Query: 306 -GFAM--FPFVMPSSLNPAHSLTMWDATSSKLTLELMTVVAVVMVPIILGYTIWSYYKMF 362
            GFA+  +P+++P        +T   A + +  L  +   A+V++PIILGYT ++Y+   
Sbjct: 270 IGFALSKYPYIIPD------HVTFRAAAADEAALAFLLPGALVLIPIILGYTAYAYWVFR 323

Query: 363 GR 364
           G+
Sbjct: 324 GK 325