Pairwise Alignments

Query, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 341 a.a., cytochrome d ubiquinol oxidase subunit II from Rhodopseudomonas palustris CGA009

 Score =  105 bits (262), Expect = 2e-27
 Identities = 91/359 (25%), Positives = 153/359 (42%), Gaps = 44/359 (12%)

Query: 11  WWVLIGVLLVG-FAITDGFDMGVGALVPIIGKNDNERRVMINSIAPHWDGNQVWLITAGG 69
           ++ +   +++G + + DGFD+GVG L P   +  ++R  M+ ++ P WDGN+ WL+  G 
Sbjct: 12  FFAVAAAIVIGLYVVLDGFDLGVGILFPFAPRV-SDRDAMMATLEPFWDGNETWLVLGGM 70

Query: 70  ALFAAWPLVYATSFSGFYLAMIVTLAALWLRPVGLDYRSKIESTKWRNNWDLAISASGFI 129
            L  A+PL +A     FY+ + + L  L +R V  ++RS  +  +++  W    +A  FI
Sbjct: 71  VLLGAFPLAFAILLPAFYVPLCLMLFGLVIRGVAFEFRS--QGGRFQIVWSATFAAGSFI 128

Query: 130 PPVIFGVAFGNLLQGVPFQLSDFLMPTYHGSFFGLLNPFALLCGLVSLFMTLLQGSAWLQ 189
                G   G  + G    +SD     + G  F  L  F++  GL  +    L G+ WL 
Sbjct: 129 AAFCQGAVLGAFV-GRSITVSD---GAFAGGPFDWLGLFSIATGLGVVAAYGLLGACWLV 184

Query: 190 MKTTSHVHQRARNVAQLTGLLTAVCFVAAGFWVQHIDGYMIVGAIDGNAASNPLNKEVIR 249
            KT+       R +   T L      V    W                    P  K  I 
Sbjct: 185 WKTSGSTQNFGRELMLPTLLCAGAAIVLISVW-------------------TPFAKPQIA 225

Query: 250 EAG-AWLHN--FEQVPVLWLAPALGVLMPLLSVLA-SRLDKGGLAFLTSSLGNAGVIFTA 305
           E   AW        +P++ +   +G+L+   S    + L    L F+TS  G        
Sbjct: 226 ERWFAWPDALLLAPLPIIAVLAGIGILLTRWSEREWAPLALSLLLFVTSLAG-------L 278

Query: 306 GFAMFPFVMPSSLNPAHSLTMWDATSSKLTLELMTVVAVVMVPIILGYTIWSYYKMFGR 364
           G +++P  +P        +T+W A+S   T  ++    V++ PIIL Y  + Y+   G+
Sbjct: 279 GASVWPEAIPG------VMTIWQASSMHRTQVIVAGAVVIIGPIILAYIGYGYWLFRGK 331