Pairwise Alignments

Query, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 379 a.a., cytochrome d ubiquinol oxidase, subunit II (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  525 bits (1351), Expect = e-153
 Identities = 251/379 (66%), Positives = 300/379 (79%), Gaps = 1/379 (0%)

Query: 1   MFDYEILRLIWWVLIGVLLVGFAITDGFDMGVGALVPIIGKNDNERRVMINSIAPHWDGN 60
           MFDYE+LR+IWW LIGVL +GFA+TDGFDMGVGAL+PIIGK+D ERR+MIN+IAPHWDGN
Sbjct: 1   MFDYEMLRVIWWALIGVLFIGFAVTDGFDMGVGALLPIIGKDDTERRIMINTIAPHWDGN 60

Query: 61  QVWLITAGGALFAAWPLVYATSFSGFYLAMIVTLAALWLRPVGLDYRSKIESTKWRNNWD 120
           QVWLITAGGALFAAWP+VYA SFSGFY+AM++ L AL++RPVG DYRSKIE+ KWR +WD
Sbjct: 61  QVWLITAGGALFAAWPMVYAVSFSGFYVAMMLVLFALYMRPVGFDYRSKIENPKWRKSWD 120

Query: 121 LAISASGFIPPVIFGVAFGNLLQGVPFQLSDFLMPTYHGSFFGLLNPFALLCGLVSLFMT 180
            A+   GF+PP+I GVAFGNLLQGVPF   +FL  TYHG  FGLLNPF LL GLVS+ M 
Sbjct: 121 WALFVGGFVPPLIIGVAFGNLLQGVPFNFDEFLRATYHGGLFGLLNPFGLLAGLVSVTMF 180

Query: 181 LLQGSAWLQMKTTSHVHQRARNVAQLTGLLTAVCFVAAGFWVQH-IDGYMIVGAIDGNAA 239
           ++QG+AWLQMKT   +  RA N  QL  LL AV F AAG W+ + IDGY++  A+D NA 
Sbjct: 181 MMQGAAWLQMKTEGELRVRAANATQLFALLVAVLFAAAGVWLANGIDGYVVTSALDHNAV 240

Query: 240 SNPLNKEVIREAGAWLHNFEQVPVLWLAPALGVLMPLLSVLASRLDKGGLAFLTSSLGNA 299
           SNP  K V  EAGAWL N+++ P+  L P LGV +PLL ++ SRL++ G AFL SSL  A
Sbjct: 241 SNPTLKTVAVEAGAWLANYDKYPITMLFPVLGVALPLLVIVVSRLNRSGFAFLFSSLAVA 300

Query: 300 GVIFTAGFAMFPFVMPSSLNPAHSLTMWDATSSKLTLELMTVVAVVMVPIILGYTIWSYY 359
            VI T G AMFPFVMPSSL+P  SLTMWDAT+S++TL +MT  A+V VPI+L YT+W+Y+
Sbjct: 301 MVILTCGAAMFPFVMPSSLDPNVSLTMWDATASEMTLTVMTWAAIVFVPIVLSYTVWTYF 360

Query: 360 KMFGRLDDKFIEDNKNSLY 378
           KMFGRL  K IEDNK SLY
Sbjct: 361 KMFGRLSRKHIEDNKASLY 379