Pairwise Alignments

Query, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 341 a.a., cytochrome d ubiquinol oxidase, subunit II (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  225 bits (573), Expect = 2e-63
 Identities = 132/368 (35%), Positives = 194/368 (52%), Gaps = 40/368 (10%)

Query: 6   ILRLIWWVLIGVLLVGFAITDGFDMGVGALVPIIGKNDNERRVMINSIAPHWDGNQVWLI 65
           +L  IW+VL G+L   + + DGFD+G+G L+P + +N+ ERR + NS  P WDGN+VWLI
Sbjct: 1   MLETIWFVLWGLLWAVYFVLDGFDLGMGTLLPFVTRNEVERRTLYNSAGPFWDGNEVWLI 60

Query: 66  TAGGALFAAWPLVYATSFSGFYLAMIVTLAALWLRPVGLDYRSKIESTKWRNNWDLAISA 125
           TAGG  FAA+P  YA  FS  Y  +++ L AL +R V  ++R+K++S  WR  WD+    
Sbjct: 61  TAGGVTFAAFPKAYAVMFSALYAPLLMLLFALIMRAVSFEFRNKVDSPGWRKLWDVFQFL 120

Query: 126 SGFIPPVIFGVAFGNLLQGVPFQLSDFLMPTYHGSFFGLLNPFALLCGLVSLFMTLLQGS 185
             F+P ++FGVAF NL  G+P          YHG+   LLNP+ L  G+  + M  L G+
Sbjct: 121 GNFVPALLFGVAFANLFMGIPIDKDG----VYHGNLLLLLNPYGLAGGVFFVLMFSLHGA 176

Query: 186 AWLQMKTTSHVHQRARNVAQ-----LTGLLTAVCFVAAGFWVQHIDGYMIVGAIDGNAAS 240
            WL +K+   +H RA   A+     L G+  AV F+A                    AA 
Sbjct: 177 LWLAIKSQGDLHARAVRTAKALWPYLVGV--AVLFLAM------------------TAAY 216

Query: 241 NPLNKEVIREAGAWLHNFEQVPVLWLAPALGVLMPLLSVLASRLDKGGLAFLTSSLGNAG 300
             L          W  N+ +VP L + P L V   L        D   LA++ S+L    
Sbjct: 217 TTL----------W-SNYAKVPPLMIFPVLAVASLLTIRFLLSSDSVVLAWVFSALFIIS 265

Query: 301 VIFTAGFAMFPFVMPSSLNPAHSLTMWDATSSKLTLELMTVVAVVMVPIILGYTIWSYYK 360
           V F     MFP ++PSS++PA  +++++  SS LTL++M  V  + VPI++ Y  W Y  
Sbjct: 266 VTFFGVLGMFPNLLPSSMDPAAHVSIYNGASSPLTLKIMLGVVAIFVPIVIAYQAWVYSV 325

Query: 361 MFGRLDDK 368
              ++ D+
Sbjct: 326 FSHKVTDE 333