Pairwise Alignments

Query, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 383 a.a., cytochrome bd-type quinol oxidase, subunit 2 cydB from Caulobacter crescentus NA1000

 Score =  382 bits (981), Expect = e-111
 Identities = 188/365 (51%), Positives = 245/365 (67%), Gaps = 3/365 (0%)

Query: 3   DYEILRLIWWVLIGVLLVGFAITDGFDMGVGALVPIIGKNDNERRVMINSIAPHWDGNQV 62
           D+  LR+IWW L+G+LL+GFA+TDGFDMGVGAL+P + K D ERR++IN++   W+GNQV
Sbjct: 6   DFATLRVIWWALVGILLIGFALTDGFDMGVGALLPFVAKTDEERRMVINTVGATWEGNQV 65

Query: 63  WLITAGGALFAAWPLVYATSFSGFYLAMIVTLAALWLRPVGLDYRSKIESTKWRNNWDLA 122
           W I  GGA+FAAWP VYA SFSGFYLAM V L A+ LRPVG  YRSK +  +WR  WD A
Sbjct: 66  WFILGGGAIFAAWPFVYAISFSGFYLAMFVVLTAMILRPVGFKYRSKRQDPRWRAFWDWA 125

Query: 123 ISASGFIPPVIFGVAFGNLLQGVPFQLSDFLMPTYHGSFFGLLNPFALLCGLVSLFMTLL 182
           +   GF+P + FGVA GN+LQG PF+L   L   Y GSF GL +PFALLCGL+S+ M +L
Sbjct: 126 LFVGGFVPVLCFGVALGNVLQGAPFRLDSDLRAFYDGSFLGLFSPFALLCGLLSVSMLVL 185

Query: 183 QGSAWLQMK-TTSHVHQRARNVAQLTGLLTAVCFVAAGFWVQHID-GYMIVGAIDGNAAS 240
            G+AW+ +K     V +RAR + +L GL + V F A GFWV     G+ I G  D    S
Sbjct: 186 HGAAWITVKGEEGPVAERARRIGELAGLASIVLFAAGGFWVAFGGMGFRIEGLADAAGPS 245

Query: 241 NPL-NKEVIREAGAWLHNFEQVPVLWLAPALGVLMPLLSVLASRLDKGGLAFLTSSLGNA 299
           NPL     +RE GAWL N+ +   + LAP LG     L++L  R     +AF  SS    
Sbjct: 246 NPLRGAAAVREPGAWLDNYGRHGWMILAPVLGFAGAALALLGLRAKSAWMAFTGSSASAV 305

Query: 300 GVIFTAGFAMFPFVMPSSLNPAHSLTMWDATSSKLTLELMTVVAVVMVPIILGYTIWSYY 359
           G+I T G +MFPF++PSS++P  SLT+W+A+SS LTL +M VV +V +P++L YT W Y 
Sbjct: 306 GIIATVGLSMFPFILPSSVDPRSSLTVWNASSSHLTLFIMLVVTIVFLPLVLAYTAWVYK 365

Query: 360 KMFGR 364
            ++GR
Sbjct: 366 VLWGR 370