Pairwise Alignments

Query, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 329 a.a., cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein (EC 1.10.3.10) from Paraburkholderia bryophila 376MFSha3.1

 Score =  114 bits (286), Expect = 3e-30
 Identities = 97/373 (26%), Positives = 165/373 (44%), Gaps = 68/373 (18%)

Query: 4   YEILRLIWWVLIGVLLVGFAITDGFDMGVGALVPIIGKNDNERRVMINSIAPHWDGNQVW 63
           + +L + W+ +IG++LV + I DGFD+G+G L  ++ K   +  VM+ +I   WD N+ W
Sbjct: 6   HTMLAITWFGVIGLMLVFYVIADGFDLGIGIL-SLLRKRREDHDVMVQTIGSVWDANETW 64

Query: 64  LITAGGALFAAWPLVYATSFSGFYLAMIVTLAALWLRPVGLDYRSKIESTKWRNNWDLAI 123
           L+  GGALF A+P  YA      YL +++ +A L +R   +++R  +        WD   
Sbjct: 65  LVVLGGALFGAFPEAYALLLQDLYLPIMLLIAGLIMRGAAIEFRHSVSHGPL---WDKVF 121

Query: 124 SASGFIPPVIFGVAFGNLLQGV-PFQLSDFLMPTYHGSFFGLLNPFALLCGLVSLFMTLL 182
                +  +  G+  G ++ G+ P  LSD  +     S  G++  ++LL           
Sbjct: 122 GVGSLVAAIAQGIVLGKVITGLTPGGLSDVFVVV---SAVGVVAGYSLL----------- 167

Query: 183 QGSAWLQMKTTSHVHQRARNVAQLTGLLTAVCFVAAGFWVQHIDGYMIVGAIDGNAASNP 242
            GS +L  KT   + Q +R +A    LL+A   VAA                        
Sbjct: 168 -GSTYLVNKTVGTIEQWSRRLA----LLSAFVTVAAA----------------------- 199

Query: 243 LNKEVIREAGAWLHNFEQVPVLWLAPALGVLMPLLSVLASRLDKGGLA--FLTSSLG--- 297
               VI     W  + +   V W  P +  ++ +L + A+      +A  +L SS G   
Sbjct: 200 ----VILTVATWFVS-DVGHVRWSQPGVFHVLVMLGLAAAVAFAFIVAALYLGSSRGPFR 254

Query: 298 NAGVIFTAGFA-----MFPFVMPSSLNPAHSLTMWDATSSKLTLELMTVVAVVMVPIILG 352
            A V+F   FA     +FP  +P  L       + ++ S   TL  M +    + P+++G
Sbjct: 255 GAVVLFVLSFAGLAISLFPDFVPGKLG------IVESASDTSTLVFMLIGIGFLFPVMIG 308

Query: 353 YTIWSYYKMFGRL 365
           Y ++ YY   G++
Sbjct: 309 YNLYQYYIFRGKV 321