Pairwise Alignments

Query, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Vibrio cholerae E7946 ATCC 55056

Subject, 335 a.a., cytochrome d ubiquinol oxidase, subunit II (RefSeq) from Shewanella sp. ANA-3

 Score =  146 bits (368), Expect = 9e-40
 Identities = 101/359 (28%), Positives = 168/359 (46%), Gaps = 35/359 (9%)

Query: 7   LRLIWWVLIGVLLVGFAITDGFDMGVGALVPIIGKNDNERRVMINSIAPHWDGNQVWLIT 66
           L LIW+ +I    + + + DGFD+G+G L P I   D +R VM+N++AP WDGN+ WL+ 
Sbjct: 5   LPLIWFGIIIFATLMYIVMDGFDLGIGILFPFIHDED-DRDVMVNTVAPVWDGNETWLVL 63

Query: 67  AGGALFAAWPLVYATSFSGFYLAMIVTLAALWLRPVGLDYRSKIESTKWRNNWDLAISAS 126
            G +L  A+PL YA       + +++ L AL  R V  ++R K  S + +  WD A    
Sbjct: 64  GGASLLGAFPLAYAIVLEALTIPLLIMLLALIFRGVAFEFRFK-SSAETKPFWDKAFMFG 122

Query: 127 GFIPPVIFGVAFGNLLQGVPFQLSDFLMPTYHGSFFGLLNPFALLCGLVSLFMTLLQGSA 186
             I     GV  G  + G+      F      GS F  L+PF+L CG   +    L G+ 
Sbjct: 123 SIIATFAQGVVLGAFISGISVDGQRF-----SGSSFDWLSPFSLFCGFGLMLAYALLGAT 177

Query: 187 WLQMKTTSHVHQRARNVAQLTGLLTAVCFVAAGFWVQHIDGYMIVGAIDGNAASNPLNKE 246
           WL  K T  +    + +A++  +   +       W   +   +   A+   +  N     
Sbjct: 178 WLVKKCTGTLKTTMQQLAKVLAVCLLMTIGIVSLWTPFVQPNI---ALRWFSLPN----- 229

Query: 247 VIREAGAWLHNFEQVPVLWLAPALGVLMPLLSVLASRLDKGGLAFLTSSLGNAGVIFTAG 306
                   L  F  VP+L L     ++  L +    R     LA +   LG +G+    G
Sbjct: 230 --------LFYFAPVPLLVLLCTKALIRALNTEDDYRPFLLTLALI--FLGFSGL----G 275

Query: 307 FAMFPFVMPSSLNPAHSLTMWDATSSKLTLELMTVVAVVMVPIILGYTIWSYYKMFGRL 365
            +++P ++P       ++++W A + + +L  M + A++++P+IL YT WSYY   G++
Sbjct: 276 ISIWPHIIPP------TISLWQAAAPESSLGFMLIGALMIIPLILAYTFWSYYVFRGKV 328