Pairwise Alignments
Query, 450 a.a., protein TolB from Vibrio cholerae E7946 ATCC 55056
Subject, 275 a.a., hypothetical protein from Sinorhizobium meliloti 1021
Score = 65.1 bits (157), Expect = 3e-15
Identities = 71/259 (27%), Positives = 111/259 (42%), Gaps = 36/259 (13%)
Query: 213 RLVLRSKQPLMSPAWSPDGQTLAYVSFQNGQAEIYMMNI-YSGKREKLTSFPRH-NGAPR 270
R+V ++++ + +P WSPDG+ L NG +Y + S E T F RH N
Sbjct: 16 RVVWQTERLVEAPNWSPDGKFLII----NGDGRLYRLGFDGSDPTEIDTGFARHCNNDHG 71
Query: 271 FSPDGKTLALVLSKT--GNLQVY-------TMDLATRRLTEVTSGRSNNTEPFWHPDGKS 321
SPDG TL ++ KT G+ +Y T L TR L G W PDG+
Sbjct: 72 ISPDGSTL-VISDKTEFGSSAIYLLPAEGGTPRLVTRNLPSYWHG--------WSPDGRM 122
Query: 322 LIFTSDRGGKPQIYQVNLSGGETKRLTWQGSQNLGGQITPDGKFLVMVNRSDSGFNLAKQ 381
L + R IY + + GGE +RLT +N G + DG+++ + + +
Sbjct: 123 LAYCGIRDQVFDIYTIPVDGGEERRLTQGQGRNDGPDWSADGEWIYFNSSRTGRMQIWRV 182
Query: 382 DLETGAMQILTKTLL-DESPSIAPNGGMVIYSS----IYNKANVLS----MVSIDG---R 429
+ +Q +T + D P +P+G ++ S +++ L ++ DG R
Sbjct: 183 RPDGKDVQRITDSPYGDWFPHPSPDGRHLLVLSYDGDVFDHPRDLDVRLRLMDPDGGNAR 242
Query: 430 FKARLPATNGRVRAPAWSP 448
L G V P WSP
Sbjct: 243 VLLELFGGQGTVNVPNWSP 261
Score = 61.2 bits (147), Expect = 4e-14
Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 2/141 (1%)
Query: 190 VVVNDKDPYPYQ-LRIADYDGYNERLVLRSKQPLMSPAWSPDGQTLAYVSFQNGQAEIYM 248
+V++DK + + + +G RLV R+ P WSPDG+ LAY ++ +IY
Sbjct: 79 LVISDKTEFGSSAIYLLPAEGGTPRLVTRNL-PSYWHGWSPDGRMLAYCGIRDQVFDIYT 137
Query: 249 MNIYSGKREKLTSFPRHNGAPRFSPDGKTLALVLSKTGNLQVYTMDLATRRLTEVTSGRS 308
+ + G+ +LT N P +S DG+ + S+TG +Q++ + + + +T
Sbjct: 138 IPVDGGEERRLTQGQGRNDGPDWSADGEWIYFNSSRTGRMQIWRVRPDGKDVQRITDSPY 197
Query: 309 NNTEPFWHPDGKSLIFTSDRG 329
+ P PDG+ L+ S G
Sbjct: 198 GDWFPHPSPDGRHLLVLSYDG 218
Score = 54.7 bits (130), Expect = 4e-12
Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 7/161 (4%)
Query: 290 VYTMDLATRRLTEVTSGRSNNTEPFWHPDGKSLIFTSDRGGKPQIYQVNLSGGETKRLTW 349
V D+AT V P W PDGK LI D ++Y++ G + +
Sbjct: 5 VEIFDIATGETRVVWQTERLVEAPNWSPDGKFLIINGDG----RLYRLGFDGSDPTEIDT 60
Query: 350 QGSQNLGGQ--ITPDGKFLVMVNRSDSGFN-LAKQDLETGAMQILTKTLLDESPSIAPNG 406
+++ I+PDG LV+ ++++ G + + E G +++T+ L +P+G
Sbjct: 61 GFARHCNNDHGISPDGSTLVISDKTEFGSSAIYLLPAEGGTPRLVTRNLPSYWHGWSPDG 120
Query: 407 GMVIYSSIYNKANVLSMVSIDGRFKARLPATNGRVRAPAWS 447
M+ Y I ++ + + +DG + RL GR P WS
Sbjct: 121 RMLAYCGIRDQVFDIYTIPVDGGEERRLTQGQGRNDGPDWS 161
Score = 50.1 bits (118), Expect = 9e-11
Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 16/150 (10%)
Query: 187 IAYVVVNDKDPYPYQLRIADYDGYNERLVLRSKQPLMSPAWSPDGQTLAYVSFQNGQAEI 246
+AY + D+ + + DG ER + + + P WS DG+ + + S + G+ +I
Sbjct: 123 LAYCGIRDQ---VFDIYTIPVDGGEERRLTQGQGRNDGPDWSADGEWIYFNSSRTGRMQI 179
Query: 247 YMMNIYSGKREKLTSFPRHNGAPRFSPDGKTLALVLSKTGNLQVYTMDLATRR------- 299
+ + +++T P + P SPDG+ L LVLS G++ + DL R
Sbjct: 180 WRVRPDGKDVQRITDSPYGDWFPHPSPDGRHL-LVLSYDGDVFDHPRDLDVRLRLMDPDG 238
Query: 300 -----LTEVTSGRSNNTEPFWHPDGKSLIF 324
L E+ G+ P W P G + F
Sbjct: 239 GNARVLLELFGGQGTVNVPNWSPSGTAFAF 268
Score = 45.4 bits (106), Expect = 2e-09
Identities = 46/196 (23%), Positives = 87/196 (44%), Gaps = 9/196 (4%)
Query: 243 QAEIYMMNIYSGKREKLTSFPRHNGAPRFSPDGKTLALVLSKTGNLQVYTMDLATRRLTE 302
++ + + +I +G+ + R AP +SPDGK L + G+ ++Y + TE
Sbjct: 2 RSSVEIFDIATGETRVVWQTERLVEAPNWSPDGKFLII----NGDGRLYRLGFDGSDPTE 57
Query: 303 VTSG--RSNNTEPFWHPDGKSLIFT-SDRGGKPQIYQVNLSGGETKRLTWQGSQNLGGQI 359
+ +G R N + PDG +L+ + G IY + GG T RL + +
Sbjct: 58 IDTGFARHCNNDHGISPDGSTLVISDKTEFGSSAIYLLPAEGG-TPRLVTRNLPSYWHGW 116
Query: 360 TPDGKFLVMVNRSDSGFNLAKQDLETGAMQILTKTL-LDESPSIAPNGGMVIYSSIYNKA 418
+PDG+ L D F++ ++ G + LT+ ++ P + +G + ++S
Sbjct: 117 SPDGRMLAYCGIRDQVFDIYTIPVDGGEERRLTQGQGRNDGPDWSADGEWIYFNSSRTGR 176
Query: 419 NVLSMVSIDGRFKARL 434
+ V DG+ R+
Sbjct: 177 MQIWRVRPDGKDVQRI 192
Score = 30.4 bits (67), Expect = 7e-05
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 201 QLRIADYDGYNERLVLR---SKQPLMSPAWSPDGQTLAYVSFQ 240
+LR+ D DG N R++L + + P WSP G A+V ++
Sbjct: 230 RLRLMDPDGGNARVLLELFGGQGTVNVPNWSPSGTAFAFVRYE 272