Pairwise Alignments
Query, 450 a.a., protein TolB from Vibrio cholerae E7946 ATCC 55056
Subject, 700 a.a., periplasmic component of the Tol biopolymer transport system-like protein (RefSeq) from Shewanella amazonensis SB2B
Score = 51.2 bits (121), Expect = 1e-10
Identities = 48/230 (20%), Positives = 98/230 (42%), Gaps = 15/230 (6%)
Query: 230 DGQTLAYVSFQNGQ--AEIYMMNIYSGKREKL-----TSFPRHNGAPRFSPDGKTLALVL 282
DG LA+++ Q A IY++++ + E + T P + FSPDG+TLA+
Sbjct: 274 DGTGLAFITTNAPQKNAGIYLLDLTEKEAEPVRLSCDTECPYRDRDFAFSPDGQTLAIA- 332
Query: 283 SKTGNLQ--VYTMDLATRRLTEVTSGRSNNTEPFWHPDGKSLIFTSDRGGKPQIYQVNLS 340
+ G++ ++ LA +T G + WH DG+ L+++++ G Y ++
Sbjct: 333 RRFGDISEDIFLRQLADGSERRLTQGIEDIRGLSWHRDGRRLVYSTEEAGNRGGYLIDTE 392
Query: 341 GGETKRLTWQGSQNLGGQITPDGKFLVMVNRSDSGFNLAKQ---DLETGAMQILTKTLLD 397
GE L G + PD LV + ++ ++ ++ ++
Sbjct: 393 TGEITALDQDGLSY--PRFVPDSDELVFYHYNNHRQLVSMHPFAEVPQAPFPMIYGNFSQ 450
Query: 398 ESPSIAPNGGMVIYSSIYNKANVLSMVSIDGRFKARLPATNGRVRAPAWS 447
+P +++ S ++ N + +DG+ + + + +PAWS
Sbjct: 451 RYADYSPEARRLVFVSNESEHNEIWTSDVDGQRRQMHTSLKRQATSPAWS 500
Score = 49.7 bits (117), Expect = 3e-10
Identities = 48/187 (25%), Positives = 77/187 (41%), Gaps = 29/187 (15%)
Query: 171 LVYE-ELTGERGAFL--TRIAYVVVNDKDPYPYQLRIADYDG-----YNERLVLRSKQPL 222
LVY E G RG +L T + D+D Y + D D YN L S P
Sbjct: 374 LVYSTEEAGNRGGYLIDTETGEITALDQDGLSYPRFVPDSDELVFYHYNNHRQLVSMHPF 433
Query: 223 MSPA-----------------WSPDGQTLAYVSFQNGQAEIYMMNIYSGKREKLTSFPRH 265
+SP+ + L +VS ++ EI+ ++ +R+ TS R
Sbjct: 434 AEVPQAPFPMIYGNFSQRYADYSPEARRLVFVSNESEHNEIWTSDVDGQRRQMHTSLKRQ 493
Query: 266 NGAPRFSPDGKTLALVLSKT---GNLQVYTMDLATRRLTEVTSGRSNNTEPFWHPDGKSL 322
+P +S DG +A V + T GN +++ +D+ + V S N+ P W D L
Sbjct: 494 ATSPAWSHDGSRIAFVAADTNHEGN-KLHILDIRDNSIRVVASPYINHGRPEWSGDDSFL 552
Query: 323 IFTSDRG 329
+ ++ G
Sbjct: 553 LASTVDG 559
Score = 48.1 bits (113), Expect = 9e-10
Identities = 57/233 (24%), Positives = 97/233 (41%), Gaps = 12/233 (5%)
Query: 200 YQLRIADYDGYNERLVLRSKQPLMSPAWSPDGQTLAYVSFQNGQAEIYMMNIYSGKREKL 259
+QL + D +L S L + WS DG++L + S G+ +I +++ G+ L
Sbjct: 201 FQLDLEHPDASPRQLTPDSSDELRA-VWSNDGKSLYFPSASAGECKITRLDLKDGQLTPL 259
Query: 260 TSFPRHNGAPRFSPDGKTLALVLSKT--GNLQVYTMDLATR-----RLTEVTSGRSNNTE 312
A + DG LA + + N +Y +DL + RL+ T + +
Sbjct: 260 ADCTSVTTAIDLTVDGTGLAFITTNAPQKNAGIYLLDLTEKEAEPVRLSCDTECPYRDRD 319
Query: 313 PFWHPDGKSLIFTSDRGG-KPQIYQVNLSGGETKRLTWQGSQNLGG-QITPDGKFLVMVN 370
+ PDG++L G I+ L+ G +RLT QG +++ G DG+ LV
Sbjct: 320 FAFSPDGQTLAIARRFGDISEDIFLRQLADGSERRLT-QGIEDIRGLSWHRDGRRLVYST 378
Query: 371 RSDSGFNLAKQDLETGAMQILTKTLLDESPSIAPNGGMVIYSSIYNKANVLSM 423
D ETG + L + L P P+ +++ N ++SM
Sbjct: 379 EEAGNRGGYLIDTETGEITALDQDGL-SYPRFVPDSDELVFYHYNNHRQLVSM 430
Score = 40.8 bits (94), Expect = 1e-07
Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
Query: 257 EKLTSFPRHNGAPRFSPDGKTLALVLSKTG-NLQVYTMDLATRRLT--EVTSGRSNNTEP 313
++LTS P SPDG+ L + G N ++ +DL + ++T S+
Sbjct: 166 DRLTSDGGSERFPSVSPDGRFLVYGGQQPGKNGSLFQLDLEHPDASPRQLTPDSSDELRA 225
Query: 314 FWHPDGKSLIFTSDRGGKPQIYQVNLSGGETKRLTWQGSQNLGGQITPDGKFLVMV 369
W DGKSL F S G+ +I +++L G+ L S +T DG L +
Sbjct: 226 VWSNDGKSLYFPSASAGECKITRLDLKDGQLTPLADCTSVTTAIDLTVDGTGLAFI 281
Score = 37.0 bits (84), Expect = 2e-06
Identities = 48/201 (23%), Positives = 88/201 (43%), Gaps = 12/201 (5%)
Query: 225 PAWSPDGQTLAYVSFQNGQ-AEIYMMNIY--SGKREKLTSFPRHNGAPRFSPDGKTLALV 281
P+ SPDG+ L Y Q G+ ++ +++ +LT +S DGK+L
Sbjct: 178 PSVSPDGRFLVYGGQQPGKNGSLFQLDLEHPDASPRQLTPDSSDELRAVWSNDGKSLYFP 237
Query: 282 LSKTGNLQVYTMDLATRRLTEVTSGRSNNTEPFWHPDGKSLIFTSDRGGKPQ--IYQVNL 339
+ G ++ +DL +LT + S T DG L F + + IY ++L
Sbjct: 238 SASAGECKITRLDLKDGQLTPLADCTSVTTAIDLTVDGTGLAFITTNAPQKNAGIYLLDL 297
Query: 340 SGGETK--RLTWQGS---QNLGGQITPDGKFLVMVNR-SDSGFNLAKQDLETGAMQILTK 393
+ E + RL+ ++ +PDG+ L + R D ++ + L G+ + LT+
Sbjct: 298 TEKEAEPVRLSCDTECPYRDRDFAFSPDGQTLAIARRFGDISEDIFLRQLADGSERRLTQ 357
Query: 394 TLLD-ESPSIAPNGGMVIYSS 413
+ D S +G ++YS+
Sbjct: 358 GIEDIRGLSWHRDGRRLVYST 378