Pairwise Alignments

Query, 450 a.a., protein TolB from Vibrio cholerae E7946 ATCC 55056

Subject, 688 a.a., peptidase, putative (RefSeq) from Shewanella amazonensis SB2B

 Score = 51.2 bits (121), Expect = 1e-10
 Identities = 54/202 (26%), Positives = 85/202 (42%), Gaps = 29/202 (14%)

Query: 194 DKDPYPYQLRIADYDGYNE-------RLVLRSKQPLMSPAWSPDGQTLAYVSFQNG---- 242
           D+D   +  RIA   G  E       R + RS Q         + Q +A+ S  NG    
Sbjct: 202 DEDRQAHVFRIAASGGAVEAITQPLGRELPRSSQSSADYDIDANEQYIAFTS--NGWDNQ 259

Query: 243 ---QAEIYMMNIYSGKREKLTSFPRH-NGAPRFSPDGKTLAL-------VLSKTGNLQVY 291
                ++++  I   + + LT   +  + +P FSPDG TLA          + T  L +Y
Sbjct: 260 VDPNIDLFLARIGGNQADNLTPDNKAPDDSPSFSPDGDTLAFSRQHIQGFYADTARLMLY 319

Query: 292 TMDLATRRLTEVTSGRSNNTEPF-WHPDGKSLIFTSDRGGKPQIYQVNLSGGETKRLTWQ 350
            MD  +++L  +T G   +   F W  DGKSL    D     ++YQ++   G+ + +T  
Sbjct: 320 DMD--SKKLQSLTDGWDRSLGSFVWSKDGKSLFSNIDDAATQRLYQIDAKTGKPRAIT-- 375

Query: 351 GSQNLGGQITPDGKFLVMVNRS 372
            + + G     D   LV  N S
Sbjct: 376 KATSFGAPAVADKSTLVATNDS 397



 Score = 36.6 bits (83), Expect = 3e-06
 Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 9/91 (9%)

Query: 267 GAPRFSPDGKTLALVLSK------TGNLQVYTMDLATRRLTEVTSGRSNNTEPFWHPDGK 320
           G+P  SP+G+ +   +++       G  +++  D   ++   +T+     +EP + PD  
Sbjct: 51  GSPVVSPNGQYIIAPVTRFDVKEDKGYTRLWLFDRDGKKQRPITAEGLGASEPVFSPDSS 110

Query: 321 SLIFTS--DRGGKPQIYQVNLSG-GETKRLT 348
           +L F S  D+    QIY + ++G GE +RLT
Sbjct: 111 TLAFVSKRDKDDAGQIYLLPMTGPGEAQRLT 141



 Score = 33.9 bits (76), Expect = 2e-05
 Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 12/95 (12%)

Query: 224 SPAWSPDGQ------TLAYVSFQNGQAEIYMMNIYSGKREKLTSFPRHNGAPRFSPDGKT 277
           SP  SP+GQ      T   V    G   +++ +    K+  +T+       P FSPD  T
Sbjct: 52  SPVVSPNGQYIIAPVTRFDVKEDKGYTRLWLFDRDGKKQRPITAEGLGASEPVFSPDSST 111

Query: 278 LALV--LSKTGNLQVYTMDLA----TRRLTEVTSG 306
           LA V    K    Q+Y + +      +RLTEV +G
Sbjct: 112 LAFVSKRDKDDAGQIYLLPMTGPGEAQRLTEVPTG 146



 Score = 32.7 bits (73), Expect = 4e-05
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 3/66 (4%)

Query: 201 QLRIADYDGYNERLVLRSKQPLMSPAWSPDGQTLAYVS--FQNGQAEIYMMNIYS-GKRE 257
           +L + D DG  +R +         P +SPD  TLA+VS   ++   +IY++ +   G+ +
Sbjct: 79  RLWLFDRDGKKQRPITAEGLGASEPVFSPDSSTLAFVSKRDKDDAGQIYLLPMTGPGEAQ 138

Query: 258 KLTSFP 263
           +LT  P
Sbjct: 139 RLTEVP 144