Pairwise Alignments

Query, 450 a.a., protein TolB from Vibrio cholerae E7946 ATCC 55056

Subject, 729 a.a., putative transcriptional regulator, CadC (RefSeq) from Shewanella amazonensis SB2B

 Score = 52.4 bits (124), Expect = 5e-11
 Identities = 51/183 (27%), Positives = 86/183 (46%), Gaps = 7/183 (3%)

Query: 201 QLRIADYDGYNERLVLRSKQPLMSPAWSPDGQTLAYVSFQNGQAEIYMMNIYSGKREKLT 260
           QL + ++     R VL+   PL S AWS DG+ L Y   +  + +++  ++ +  R +LT
Sbjct: 384 QLMVFNFSTGEWRQVLKVGYPLKSIAWSADGKGLIY---RAEEGQLHRFDLDTKDRVRLT 440

Query: 261 SFPRHNGAPRFSPDGKTLALVLS-KTGNLQVYTMDLATRRLTEVTSGRSNNTEPFWHPDG 319
              +   +PR +  G+T+A+V       L  ++    T+    V+S R +       PDG
Sbjct: 441 KILQEINSPRSNSKGQTVAVVGELMEEELWHWSAPGNTKPEPWVSSSRRDYRGAI-SPDG 499

Query: 320 KSLIFTSDRGGKPQIYQVNLSGGETKRLTWQGSQNLGGQI-TPDGKFLV-MVNRSDSGFN 377
               F S+R G PQI+   L G E K   +     +   I +P+GK L   +N +    +
Sbjct: 500 TLTAFVSNRTGLPQIWLRQLKGEEIKLTHFDRFSFIDELIFSPNGKLLAGTINGAAFTLD 559

Query: 378 LAK 380
           +AK
Sbjct: 560 IAK 562



 Score = 49.7 bits (117), Expect = 3e-10
 Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 8/124 (6%)

Query: 226 AWSPDGQTLAYVSFQNGQAEIYMMNIYSGKREKLTSFPRHNGAPR--FSPDGKTLALVLS 283
           A SPDG   A+VS + G  +I++  +  G+  KLT F R +      FSP+GK LA    
Sbjct: 494 AISPDGTLTAFVSNRTGLPQIWLRQL-KGEEIKLTHFDRFSFIDELIFSPNGKLLA---- 548

Query: 284 KTGNLQVYTMDLATRRLTEVTSGRSNNTEPFWHPDGKSLIFTSDRGGKPQIYQVNLSGGE 343
            T N   +T+D+A   +  +    S     F   D + ++F+S+  GK Q+  V++  G+
Sbjct: 549 GTINGAAFTLDIAKSAIHFIPGRTSVRNISFGMNDDELVLFSSE-AGKRQLQLVDMRTGK 607

Query: 344 TKRL 347
           T  L
Sbjct: 608 TLNL 611



 Score = 34.3 bits (77), Expect = 1e-05
 Identities = 42/178 (23%), Positives = 80/178 (44%), Gaps = 10/178 (5%)

Query: 225 PAWSPDGQTLAYVSFQ-NGQAEIYMMNIYSGKREKLTSFPRHNGAPRFSPDGKTLALVLS 283
           PAWS DG  LAY++F   G+ E+ ++++ +   + ++   +   +   +  G+ L  V S
Sbjct: 269 PAWSDDGGHLAYLNFDGKGRCELILLDLLTRNAKVVSQCDKATQSSALAIRGQELYFVDS 328

Query: 284 K--TGNLQVYTMDLATRRLTEVTSGRSNNTEPF---WHPDGKSL-IFTSDRGGKPQIYQV 337
                  ++Y ++L T +  +++   S     +     PD   + +  +      Q+   
Sbjct: 329 DGVEDFKKIYQVNLNTLKKEQLSRPHSIGRGDYGLSLSPDKSQMAVLRNLSWFDTQLMVF 388

Query: 338 NLSGGETKRLTWQGSQNLGGQITPDGKFLVMVNRSDSGFNLAKQDLETGAMQILTKTL 395
           N S GE +++   G        + DGK L+   R++ G  L + DL+T     LTK L
Sbjct: 389 NFSTGEWRQVLKVGYPLKSIAWSADGKGLIY--RAEEG-QLHRFDLDTKDRVRLTKIL 443



 Score = 30.4 bits (67), Expect = 2e-04
 Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 5/86 (5%)

Query: 259 LTSFPRHNGAPRFSPDGKTLALVLS--KTGNLQVYTMDLATRR--LTEVTSGRSNNTEPF 314
           LTS       P  SPDGK LA      K    +V   DL T +  L + +    N   P 
Sbjct: 211 LTSLEGQEVDPVLSPDGKKLAFAFRDLKAKEWRVLLQDLTTGQVSLADNSPTAYNQRYPA 270

Query: 315 WHPDGKSLIFTS-DRGGKPQIYQVNL 339
           W  DG  L + + D  G+ ++  ++L
Sbjct: 271 WSDDGGHLAYLNFDGKGRCELILLDL 296