Pairwise Alignments
Query, 450 a.a., protein TolB from Vibrio cholerae E7946 ATCC 55056
Subject, 1062 a.a., amidohydrolase (RefSeq) from Shewanella amazonensis SB2B
Score = 62.0 bits (149), Expect = 9e-14
Identities = 48/168 (28%), Positives = 71/168 (42%), Gaps = 22/168 (13%)
Query: 202 LRIADYDGYNERLVLRSKQPLM-SPAWSPDGQTLA-----YVSFQNGQAEIYMMNIYSGK 255
L + D DG N R V + L+ SPAWSPD Q L S G E+++ +I G+
Sbjct: 116 LWVMDADGKNPRAVTKETFRLINSPAWSPDSQYLVGRKHFTASRSLGAGEVWLYHISGGE 175
Query: 256 REKLTSFPRHN---GAPRFSPDGKTLALVLSKT-------------GNLQVYTMDLATRR 299
+LT P G P +SPDG+ + T G ++ D T
Sbjct: 176 GVQLTERPNDQKDLGEPAYSPDGRYIYFSQDATPGKTFHYSKDSVAGIYKIKRYDTQTGE 235
Query: 300 LTEVTSGRSNNTEPFWHPDGKSLIFTSDRGGKPQIYQVNLSGGETKRL 347
+ + G P PDGK L F G + +Y ++L+ G ++L
Sbjct: 236 IEVLIEGTGGAIRPTPSPDGKKLAFIKRDGFQSTLYSLDLASGAKEKL 283
Score = 55.5 bits (132), Expect = 9e-12
Identities = 50/193 (25%), Positives = 90/193 (46%), Gaps = 30/193 (15%)
Query: 223 MSPAWSPDGQTLAYVSFQNGQAEIYMMNIYSGKREKLTSFPRHNGAPRFSPDGKTLALVL 282
M+ + SPDG+ + + +IY + G+ E L S P +SPDGK +A
Sbjct: 53 MNLSLSPDGKYIVFDLL----GDIYRIPAKGGEAEVLASGIAWQMQPVYSPDGKYIAFTS 108
Query: 283 SKTGNLQVYTMDL---ATRRLTEVTSGRSNNTEPFWHPDGKSLI----FTSDRG-GKPQI 334
+ G ++ MD R +T+ T N+ P W PD + L+ FT+ R G ++
Sbjct: 109 DQDGGDNLWVMDADGKNPRAVTKETFRLINS--PAWSPDSQYLVGRKHFTASRSLGAGEV 166
Query: 335 YQVNLSGGETKRLTWQ--GSQNLG-GQITPDGKFLVMVNRSDSG-------------FNL 378
+ ++SGGE +LT + ++LG +PDG+++ + G + +
Sbjct: 167 WLYHISGGEGVQLTERPNDQKDLGEPAYSPDGRYIYFSQDATPGKTFHYSKDSVAGIYKI 226
Query: 379 AKQDLETGAMQIL 391
+ D +TG +++L
Sbjct: 227 KRYDTQTGEIEVL 239
Score = 51.6 bits (122), Expect = 1e-10
Identities = 54/192 (28%), Positives = 88/192 (45%), Gaps = 24/192 (12%)
Query: 223 MSPAWSPDGQTLAYVSFQNGQAEIYMMNIYSGKREKLTSFP--RHNGAPRFSPDGKTLA- 279
M P +SPDG+ +A+ S Q+G +++M+ GK + + R +P +SPD + L
Sbjct: 93 MQPVYSPDGKYIAFTSDQDGGDNLWVMDA-DGKNPRAVTKETFRLINSPAWSPDSQYLVG 151
Query: 280 ---LVLSKT---GNLQVYTMDLATR-RLTEVTSGRSNNTEPFWHPDGKSLIFTSDRG-GK 331
S++ G + +Y + +LTE + + + EP + PDG+ + F+ D GK
Sbjct: 152 RKHFTASRSLGAGEVWLYHISGGEGVQLTERPNDQKDLGEPAYSPDGRYIYFSQDATPGK 211
Query: 332 PQIYQVNLSGG--ETKRLTWQGSQ------NLGGQI----TPDGKFLVMVNRSDSGFNLA 379
Y + G + KR Q + GG I +PDGK L + R L
Sbjct: 212 TFHYSKDSVAGIYKIKRYDTQTGEIEVLIEGTGGAIRPTPSPDGKKLAFIKRDGFQSTLY 271
Query: 380 KQDLETGAMQIL 391
DL +GA + L
Sbjct: 272 SLDLASGAKEKL 283
Score = 44.7 bits (104), Expect = 2e-08
Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 23/160 (14%)
Query: 206 DYDGYNERLVLRSKQPLMSPAWSPDGQTLAYVSFQNGQAEIYMMNIYSGKREKLTSFPRH 265
D+D ++ ++ LR Q SPDG+ + Y + ++++ ++ GK +LT
Sbjct: 355 DHDNFDVKM-LRMAQV------SPDGKHVVYEAL----GKLWLKSLPEGKVTRLTKLDDG 403
Query: 266 NGA--PRFSPDGKTLALVL-SKTGNLQVYTMDLATRRLTEVTSGRSNNTEPFWHPDGKSL 322
P +S DGK LA + V ++L R+ T +T EP + P G+ L
Sbjct: 404 ISELYPTWSRDGKQLAFTTWTDKDQGSVLVINLGNRKTTTITQVPGKYVEPVFSPTGELL 463
Query: 323 IFTSDRGG---------KPQIYQVNLSGGETKRLTWQGSQ 353
++ GG P IY+ +L E R++ G Q
Sbjct: 464 VYRKASGGYITPTTWSNDPGIYKASLKTKENTRISALGFQ 503
Score = 41.2 bits (95), Expect = 2e-07
Identities = 46/201 (22%), Positives = 83/201 (41%), Gaps = 29/201 (14%)
Query: 272 SPDGKTLALVLSKTGNLQVYTMDLATRRLTEVTSGRSNNTEPFWHPDGKSLIFTSDRGGK 331
SPDGK + L +Y + + SG + +P + PDGK + FTSD+ G
Sbjct: 58 SPDGKYIVFDLLG----DIYRIPAKGGEAEVLASGIAWQMQPVYSPDGKYIAFTSDQDGG 113
Query: 332 PQIYQVNLSGGETKRLTWQGSQNLGGQI-TPDGKFLV-----MVNRSDSGFNLAKQDLET 385
++ ++ G + +T + + + +PD ++LV +RS + +
Sbjct: 114 DNLWVMDADGKNPRAVTKETFRLINSPAWSPDSQYLVGRKHFTASRSLGAGEVWLYHISG 173
Query: 386 GAMQILTKTLLDE----SPSIAPNGGMVIYSS--------IYNKANVLSMVSI------D 427
G LT+ D+ P+ +P+G + +S Y+K +V + I
Sbjct: 174 GEGVQLTERPNDQKDLGEPAYSPDGRYIYFSQDATPGKTFHYSKDSVAGIYKIKRYDTQT 233
Query: 428 GRFKARLPATNGRVRAPAWSP 448
G + + T G +R P SP
Sbjct: 234 GEIEVLIEGTGGAIR-PTPSP 253
Score = 36.2 bits (82), Expect = 5e-06
Identities = 61/291 (20%), Positives = 115/291 (39%), Gaps = 52/291 (17%)
Query: 200 YQLRIADYDGYNERLVLRSKQPLMSPAWSPDGQTLAYVSFQNGQAEIYMMNIYSGKREKL 259
Y+++ D +++ + P SPDG+ LA++ Q+ +Y +++ SG +EKL
Sbjct: 224 YKIKRYDTQTGEIEVLIEGTGGAIRPTPSPDGKKLAFIKRDGFQSTLYSLDLASGAKEKL 283
Query: 260 ---------TSFPRHNGAPRFSPDGKTLALVLSKTGNLQVYTMDLATRRLTEV------- 303
++ H P + D + ++ G +Q ++++++++TEV
Sbjct: 284 YGELDRDMQETWAIHGVYPTMAWDKSSNDILFWAKGKIQ--RLNVSSKKVTEVPFHVKTQ 341
Query: 304 --TSGRSNNTEPFWH--------------PDGKSLIFTSDRGGKPQIYQVNLSGGETKRL 347
T+ H PDGK +++ + +++ +L G+ RL
Sbjct: 342 LDVQPSVRYTQNLDHDNFDVKMLRMAQVSPDGKHVVYEA----LGKLWLKSLPEGKVTRL 397
Query: 348 TW--QGSQNLGGQITPDGKFLVMVNRSDSG------FNLAKQDLETGAMQILTKTLLDES 399
T G L + DGK L +D NL + T Q+ K +
Sbjct: 398 TKLDDGISELYPTWSRDGKQLAFTTWTDKDQGSVLVINLGNRKTTT-ITQVPGKYV---E 453
Query: 400 PSIAPNGGMVIYSSIYNKANVLSMVSID-GRFKARLPA-TNGRVRAPAWSP 448
P +P G +++Y + S D G +KA L N R+ A + P
Sbjct: 454 PVFSPTGELLVYRKASGGYITPTTWSNDPGIYKASLKTKENTRISALGFQP 504