Pairwise Alignments
Query, 450 a.a., protein TolB from Vibrio cholerae E7946 ATCC 55056
Subject, 1067 a.a., amidohydrolase (RefSeq) from Shewanella loihica PV-4
Score = 54.7 bits (130), Expect = 1e-11
Identities = 39/157 (24%), Positives = 72/157 (45%), Gaps = 15/157 (9%)
Query: 225 PAWSPDGQTLAYVSFQNGQ-AEIYMMNIYSGKREKLTSFPRHNGAPRFSPDGKTLALVLS 283
P WS DG+ + + ++ + Q + ++N G+ + LT P P FSPDG+ +
Sbjct: 417 PQWSRDGKKIVFTTWDDDQQGSVRVINARGGRSKTLTQEPGKYVEPTFSPDGELVVYRKI 476
Query: 284 KTGNLQ---------VYTMDLATRRLTEVTSGRSNNTEPFWHPDGKSLIFTSDRGGKPQI 334
K G + +Y +D+ + ++T + +P + + + F D G PQ+
Sbjct: 477 KGGYITPRTWSQEPGLYVVDIKGKESRKIT---PDGFQPQFGAESDRVYF-MDHGETPQL 532
Query: 335 YQVNLSGGETKRLTWQGSQNLGGQITPDGKFLVMVNR 371
+NL G + KR+ + +++PDGK L R
Sbjct: 533 ASINLHGFQ-KRVHYTSKHATEFRVSPDGKQLAFAER 568
Score = 53.9 bits (128), Expect = 2e-11
Identities = 58/250 (23%), Positives = 110/250 (44%), Gaps = 31/250 (12%)
Query: 223 MSPAWSPDGQTLAYVSFQNGQAEIYMMNIYSGKREKLTSFPRHNGAPRFSPDGKTLALVL 282
M+ + SPDG+ + + +IY M I G+ + L P +SPDGK +A
Sbjct: 61 MNVSVSPDGKQIVFDLL----GDIYQMPIEGGEAKPLAQGIAWQMQPVYSPDGKYIAFTS 116
Query: 283 SKTGNLQVYTMD---LATRRLTEVTSGRSNNTEPFWHPDGKSLI----FTSDRG-GKPQI 334
+ G ++ M+ R +T+ T N+ P W PD + LI FT R G ++
Sbjct: 117 DEDGGDNIWVMNADGTDPRPVTKETFRLLNS--PAWSPDSQYLIGRKHFTGSRSLGAGEV 174
Query: 335 YQVNLSGGETKRLTWQGSQ--NLG-GQITPDGKFLVMVNRSDSG-------------FNL 378
+ +++GG +LT + ++ +LG +PDG+++ + G + +
Sbjct: 175 WLYHVAGGTGVKLTERPNEQKDLGEPAYSPDGRYVYFSQDATPGKTFHYSKDSVKGIYKI 234
Query: 379 AKQDLETGAMQILTK-TLLDESPSIAPNGGMVIYSSIYNKANVLSMVSIDGRFKARLPAT 437
+ D +TG +++L + T P+ +P+G + Y + L ++ + K +L
Sbjct: 235 KRYDTQTGDIEVLVEGTGGAIRPTPSPDGTKLAYIKRDGFQSTLYLLDLKSGKKTKLYDK 294
Query: 438 NGRVRAPAWS 447
R W+
Sbjct: 295 LDRDMQETWA 304
Score = 51.2 bits (121), Expect = 2e-10
Identities = 43/166 (25%), Positives = 67/166 (40%), Gaps = 22/166 (13%)
Query: 204 IADYDGYNERLVLRSKQPLM-SPAWSPDGQTLA-----YVSFQNGQAEIYMMNIYSGKRE 257
+ + DG + R V + L+ SPAWSPD Q L S G E+++ ++ G
Sbjct: 126 VMNADGTDPRPVTKETFRLLNSPAWSPDSQYLIGRKHFTGSRSLGAGEVWLYHVAGGTGV 185
Query: 258 KLTSFPRHN---GAPRFSPDGKTLALVLSKT-------------GNLQVYTMDLATRRLT 301
KLT P G P +SPDG+ + T G ++ D T +
Sbjct: 186 KLTERPNEQKDLGEPAYSPDGRYVYFSQDATPGKTFHYSKDSVKGIYKIKRYDTQTGDIE 245
Query: 302 EVTSGRSNNTEPFWHPDGKSLIFTSDRGGKPQIYQVNLSGGETKRL 347
+ G P PDG L + G + +Y ++L G+ +L
Sbjct: 246 VLVEGTGGAIRPTPSPDGTKLAYIKRDGFQSTLYLLDLKSGKKTKL 291
Score = 40.0 bits (92), Expect = 4e-07
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 8/111 (7%)
Query: 302 EVTSGRSNNTEPFWHPDGKSLIFTSDRGGKPQIYQVNLSGGETKRLTWQGSQNLGGQITP 361
+VT G N PDGK ++F D G IYQ+ + GGE K L + + +P
Sbjct: 54 DVTEGTWMNVSV--SPDGKQIVF--DLLG--DIYQMPIEGGEAKPLAQGIAWQMQPVYSP 107
Query: 362 DGKFLVMVNRSDSGFNLAKQDLETGAMQILTKTL--LDESPSIAPNGGMVI 410
DGK++ + D G N+ + + + +TK L SP+ +P+ +I
Sbjct: 108 DGKYIAFTSDEDGGDNIWVMNADGTDPRPVTKETFRLLNSPAWSPDSQYLI 158
Score = 38.1 bits (87), Expect = 1e-06
Identities = 53/260 (20%), Positives = 103/260 (39%), Gaps = 60/260 (23%)
Query: 200 YQLRIADYDGYNERLVLRSKQPLMSPAWSPDGQTLAYVSFQNGQAEIYMMNIYSGKREKL 259
Y+++ D + +++ + P SPDG LAY+ Q+ +Y++++ SGK+ KL
Sbjct: 232 YKIKRYDTQTGDIEVLVEGTGGAIRPTPSPDGTKLAYIKRDGFQSTLYLLDLKSGKKTKL 291
Query: 260 ---------TSFPRHNGAPRFSPDGKTLALVLSKTGNLQVYTMDLATRRLTEV------- 303
++ H P S LV G ++ +D+ ++ E+
Sbjct: 292 YDKLDRDMQETWAIHGVYPTMSWTANNEELVFWAGG--KINRLDIESKSAKEIPFKVKTE 349
Query: 304 ------TSGRSNNTEPFW----------HPDGKSLIFTSDRGGKPQIYQVNLSGGETKRL 347
+ N + + PDG +++ + +++ L G+ RL
Sbjct: 350 LAVQPSVRFKQNLDQDSFDVKMLRMAQVSPDGDKVVYEA----LGKLWVKRLPEGKVSRL 405
Query: 348 TWQGSQ--NLGGQITPDGKFLVMVNRSDSGFNLAKQDLETGAMQIL------TKTLLDE- 398
T Q L Q + DGK +V D + G+++++ +KTL E
Sbjct: 406 TDLDDQVRELYPQWSRDGKKIVFTTWDDD---------QQGSVRVINARGGRSKTLTQEP 456
Query: 399 ----SPSIAPNGGMVIYSSI 414
P+ +P+G +V+Y I
Sbjct: 457 GKYVEPTFSPDGELVVYRKI 476