Pairwise Alignments

Query, 450 a.a., protein TolB from Vibrio cholerae E7946 ATCC 55056

Subject, 675 a.a., peptidase, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 56.2 bits (134), Expect = 3e-12
 Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 14/168 (8%)

Query: 217 RSKQPLMSPAWSPDGQTLAYVSFQNG-----QAEIYMMNIYSGKREKLT-SFPRHNGAPR 270
           RS Q   S   SPD + +A+ ++ +      + ++++  I   K E +T   P  +  P 
Sbjct: 219 RSSQSSESYDISPDERLIAFSAYGSDNRVDPKLDLFLATIGGNKAENITPENPAPDLNPS 278

Query: 271 FSPDGKTLALVLSKTGNLQVYT-----MDLATRRLTEVTSGRSNNTEPF-WHPDGKSLIF 324
           FSP+GKTLA    K       T     +D+++R+LT +T     +   F W PD K    
Sbjct: 279 FSPNGKTLAFTRQKIPGFYADTARLMLLDVSSRKLTTLTPDWDRSVSEFEWTPDSKGFYA 338

Query: 325 TSDRGGKPQIYQVNLSGGETKRLTWQGSQNLGGQITPDGKFLVMVNRS 372
           + +     +IY ++   G+ K +T Q +      I  DG+ L+  N+S
Sbjct: 339 SIEDAATNRIYHIDAKSGKAKAIT-QATDFSQPAIAKDGQ-LIATNQS 384



 Score = 42.4 bits (98), Expect = 5e-08
 Identities = 55/232 (23%), Positives = 94/232 (40%), Gaps = 28/232 (12%)

Query: 201 QLRIADYDGYNERLVLRSKQPLMSPAWSPDGQTLAYVSFQNGQ--AEIYMMNIYS-GKRE 257
           QL   D +G N R +      +  P +SPDG+TLA++S +N     +IY++ +   G+  
Sbjct: 66  QLWRFDVEGKNNRAITAKGLKVSEPVFSPDGKTLAFISERNDDDAGQIYLLPMDGPGEAA 125

Query: 258 KLTSFPRHNGAPRFSPDGKTLALV--LSKTGNLQVYTMDLATRRLTEVTSGRSNNTEPFW 315
           KLT  P   G       GK L  +  +    N +     L T +  +V S R  N  P+ 
Sbjct: 126 KLTDIP--TGVNGIKWVGKHLYFISNIFPEQNWEQMKAQLKTDKDNKV-SARQWNALPYS 182

Query: 316 HPDGKSLIFTSDRGGKPQIYQVNLSGGETKRLTWQGSQNL--------GGQITPDGKFLV 367
             D        D   +  ++++  +GG  + +T      L           I+PD + + 
Sbjct: 183 QFD-----HWLDERRQAHVFRIPATGGTVEAVTQPLGHELPRSSQSSESYDISPDERLIA 237

Query: 368 MV-----NRSDSGFNLAKQDLETGAMQILT--KTLLDESPSIAPNGGMVIYS 412
                  NR D   +L    +     + +T      D +PS +PNG  + ++
Sbjct: 238 FSAYGSDNRVDPKLDLFLATIGGNKAENITPENPAPDLNPSFSPNGKTLAFT 289



 Score = 37.0 bits (84), Expect = 2e-06
 Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 3/66 (4%)

Query: 286 GNLQVYTMDLATRRLTEVTSGRSNNTEPFWHPDGKSLIFTSDRGGKP--QIYQVNLSG-G 342
           G+ Q++  D+  +    +T+     +EP + PDGK+L F S+R      QIY + + G G
Sbjct: 63  GSTQLWRFDVEGKNNRAITAKGLKVSEPVFSPDGKTLAFISERNDDDAGQIYLLPMDGPG 122

Query: 343 ETKRLT 348
           E  +LT
Sbjct: 123 EAAKLT 128



 Score = 29.6 bits (65), Expect = 3e-04
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 6/71 (8%)

Query: 242 GQAEIYMMNIYSGKREKLTSFPRHNGAPRFSPDGKTLALVLSK----TGNLQVYTMD--L 295
           G  +++  ++       +T+       P FSPDGKTLA +  +     G + +  MD   
Sbjct: 63  GSTQLWRFDVEGKNNRAITAKGLKVSEPVFSPDGKTLAFISERNDDDAGQIYLLPMDGPG 122

Query: 296 ATRRLTEVTSG 306
              +LT++ +G
Sbjct: 123 EAAKLTDIPTG 133