Pairwise Alignments

Query, 450 a.a., protein TolB from Vibrio cholerae E7946 ATCC 55056

Subject, 442 a.a., tolB protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  447 bits (1150), Expect = e-130
 Identities = 220/449 (48%), Positives = 319/449 (71%), Gaps = 13/449 (2%)

Query: 3   KRLVFVLMLIGTGFSNIANAALELVITDGIDSARPIAIVPFKWEGATKLPEDVSAVIASD 62
           K L  V++L  T     A AAL++VIT+G+D+ARPIA++PF+W+GA   P+ ++ V+ SD
Sbjct: 6   KWLTLVVLLCTTP----AKAALDIVITEGVDAARPIAVMPFQWQGAGAPPQAIADVVMSD 61

Query: 63  LQRSGKFSPVPTSKMPQTPYSE-EQVNFGKWTSMGVDSLLTGTITQNAEGSYVISYQLVD 121
           L RSG F P+    +PQ       Q +   WT++  ++L+ G++       +++S++L+D
Sbjct: 62  LVRSGTFKPLDELGLPQRGIGALAQFDANAWTNVSAEALVVGSVKPYGADQFLVSFELID 121

Query: 122 IVRGQLTQGQSKALSQDGQLVLSKDHVLFNKVATVPASRMREYAHRIADLVYEELTGERG 181
           +V+ Q     ++AL          + ++ ++   + A++ R+Y HRI+D+VYE+LTG RG
Sbjct: 122 LVKAQ-----NQALKGSAN---PTELLMDSRQTVISATQFRQYGHRISDIVYEKLTGIRG 173

Query: 182 AFLTRIAYVVVNDKDPYPYQLRIADYDGYNERLVLRSKQPLMSPAWSPDGQTLAYVSFQN 241
           AFLTRI+YVVVN      Y L IADYDGYNE+++LRS +PLMSPAWSPDG+ LAYVSF+N
Sbjct: 174 AFLTRISYVVVNHSQKAAYSLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRRLAYVSFEN 233

Query: 242 GQAEIYMMNIYSGKREKLTSFPRHNGAPRFSPDGKTLALVLSKTGNLQVYTMDLATRRLT 301
            +AEI++ ++Y+  R K++SF   NGAP FSPDGK+LA+ LSK G  ++Y +D+AT+ + 
Sbjct: 234 KKAEIFVQDLYTQVRTKVSSFSGINGAPSFSPDGKSLAVTLSKDGQPEIYVIDIATKAIK 293

Query: 302 EVTSGRSNNTEPFWHPDGKSLIFTSDRGGKPQIYQVNLSGGETKRLTWQGSQNLGGQITP 361
            +T+  S +TEP W+PDGKSL+FTS+RGG+PQ+Y+V+L+ G+  R T++G  NLGG ITP
Sbjct: 294 RITNHYSIDTEPSWYPDGKSLLFTSERGGRPQLYRVDLNSGKVTRETFEGEWNLGGSITP 353

Query: 362 DGKFLVMVNRSDSGFNLAKQDLETGAMQILTKTLLDESPSIAPNGGMVIYSSIYNKANVL 421
           DG+ ++ VNR++  FN+A+ DL T  MQ+LT T LDESPS+APNG MVIY + +    VL
Sbjct: 354 DGRSMIFVNRTNGKFNIARMDLSTRFMQVLTSTRLDESPSVAPNGTMVIYGTTHQGKQVL 413

Query: 422 SMVSIDGRFKARLPATNGRVRAPAWSPFL 450
           + VS DGRFKARLPA  G V++P+WSPFL
Sbjct: 414 AAVSTDGRFKARLPAGQGEVKSPSWSPFL 442