Pairwise Alignments

Query, 450 a.a., protein TolB from Vibrio cholerae E7946 ATCC 55056

Subject, 413 a.a., TolB domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 60.5 bits (145), Expect = 1e-13
 Identities = 39/146 (26%), Positives = 70/146 (47%), Gaps = 14/146 (9%)

Query: 186 RIAYVVVNDKDPYPYQLRIADYDGYNERLVLRSKQPLMSPAWSPDGQTLAYVSFQNGQAE 245
           ++AY  + DK   P  L    Y G + R          +P +SP+ + + +VS + G  E
Sbjct: 138 QMAYFSLGDK--VPGSLFPLLYSGVSHR----------NPDYSPEAKRIVFVSSETGYNE 185

Query: 246 IYMMNIYSGKREKLTSFPRHNGAPRFSPDGKTLALVLSKTGN--LQVYTMDLATRRLTEV 303
           I+  +I   K E+LT        PR+SPDG  +A +     N   +++ +DL  + +T +
Sbjct: 186 IWTSDINGQKLEQLTQLKSRVAYPRWSPDGSRIAFIAPDDRNEGNRIFILDLTNKNITAL 245

Query: 304 TSGRSNNTEPFWHPDGKSLIFTSDRG 329
            S   N+  P W+  G +++ ++  G
Sbjct: 246 ASSYHNHGRPSWNWQGTAVLASTADG 271



 Score = 51.2 bits (121), Expect = 6e-11
 Identities = 46/212 (21%), Positives = 96/212 (45%), Gaps = 11/212 (5%)

Query: 246 IYMMNIYSGKR--EKLTSFPRHNGAPR---FSPDGKTLALVLSKTGNLQ--VYTMDLATR 298
           IY +++ S +   E+L+   R N   R   +SPDG+ LA+   +  N+   ++  DLA+ 
Sbjct: 4   IYRLSLKSTEATAERLSCDTRCNYEDRDLAYSPDGRWLAIA-RRFSNISEDIFIRDLASA 62

Query: 299 RLTEVTSGRSNNTEPFWHPDGKSLIFTSDRGGKPQIYQVNLSGGETKRLTWQGSQNLGGQ 358
               +T G  +     W PD ++L+F ++  G    + ++++  + + L  +G  +    
Sbjct: 63  HEKRLTQGLEDIRGLSWTPDSQALVFATEDSGSSNGFTLDINTAQIRSLDVEG-MSYPSS 121

Query: 359 ITPDGKFLV-MVNRSDSGFNLAKQDLETGAM-QILTKTLLDESPSIAPNGGMVIYSSIYN 416
           ++ +G+ +    +R       +  D   G++  +L   +   +P  +P    +++ S   
Sbjct: 122 VSAEGELVYHQYHRQFQMAYFSLGDKVPGSLFPLLYSGVSHRNPDYSPEAKRIVFVSSET 181

Query: 417 KANVLSMVSIDGRFKARLPATNGRVRAPAWSP 448
             N +    I+G+   +L     RV  P WSP
Sbjct: 182 GYNEIWTSDINGQKLEQLTQLKSRVAYPRWSP 213



 Score = 48.9 bits (115), Expect = 3e-10
 Identities = 45/218 (20%), Positives = 84/218 (38%), Gaps = 60/218 (27%)

Query: 204 IADYDGYNERLVLRSKQPLMSPAWSPDGQTLAYVSFQNGQAEIYMMNIYSGKREKLT--- 260
           I D    +E+ + +  + +   +W+PD Q L + +  +G +  + ++I + +   L    
Sbjct: 56  IRDLASAHEKRLTQGLEDIRGLSWTPDSQALVFATEDSGSSNGFTLDINTAQIRSLDVEG 115

Query: 261 -SFPRHNGA----------------------------------------PRFSPDGKTLA 279
            S+P    A                                        P +SP+ K + 
Sbjct: 116 MSYPSSVSAEGELVYHQYHRQFQMAYFSLGDKVPGSLFPLLYSGVSHRNPDYSPEAKRIV 175

Query: 280 LVLSKTGNLQVYTMDLATRRLTEVTSGRSNNTEPFWHPDGKSLIFTS--DRGGKPQIYQV 337
            V S+TG  +++T D+  ++L ++T  +S    P W PDG  + F +  DR    +I+ +
Sbjct: 176 FVSSETGYNEIWTSDINGQKLEQLTQLKSRVAYPRWSPDGSRIAFIAPDDRNEGNRIFIL 235

Query: 338 NLSGGETKRL------------TWQGSQNLGGQITPDG 363
           +L+      L             WQG+  L    T DG
Sbjct: 236 DLTNKNITALASSYHNHGRPSWNWQGTAVLAS--TADG 271