Pairwise Alignments
Query, 450 a.a., protein TolB from Vibrio cholerae E7946 ATCC 55056
Subject, 1049 a.a., hypothetical amidohydrolase (NCBI ptt file) from Shewanella oneidensis MR-1
Score = 56.6 bits (135), Expect = 4e-12
Identities = 46/166 (27%), Positives = 67/166 (40%), Gaps = 22/166 (13%)
Query: 204 IADYDGYNERLVLRSKQPLM-SPAWSPDGQTLA-----YVSFQNGQAEIYMMNIYSGKRE 257
I + DG N R V L+ SPAWSPD Q L S G E+++ ++ G+
Sbjct: 107 IMNADGSNPRTVTSETFRLLNSPAWSPDSQYLIGRKHFTASRSLGAGEVWLYHVAGGEGV 166
Query: 258 KLTSFPRHN---GAPRFSPDGKTLALVLSKT-------------GNLQVYTMDLATRRLT 301
KLT P G P +SPDG+ + T G ++ D T +
Sbjct: 167 KLTERPNDEKDLGEPAYSPDGRYIYFSQDDTPGKTFHYSKDSVNGIYKIKRYDTKTGNIE 226
Query: 302 EVTSGRSNNTEPFWHPDGKSLIFTSDRGGKPQIYQVNLSGGETKRL 347
+ G P PDG L + + +Y ++L GET +L
Sbjct: 227 ILIEGTGGAIRPTPSPDGTKLAYIKRDDFQSSLYLLDLKSGETTKL 272
Score = 56.6 bits (135), Expect = 4e-12
Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 13/157 (8%)
Query: 225 PAWSPDGQTLAYVSFQN-GQAEIYMMNIYSGKREKLTSFPRHNGAPRFSPDGKTLALVLS 283
P WS DG+ + + ++ + Q + +++ GK ++LT+ P P F+P+G+ + +
Sbjct: 398 PQWSRDGKNIVFTTWNDQDQGAVQVISAKGGKAKQLTTEPGKYVEPTFAPNGELVVYRKT 457
Query: 284 KTGNLQ---------VYTMDLATRRLTEVTSGRSNNTEPFWHPDGKSLIFTSDRGGKPQI 334
+ GNL +Y +DL T++ T++T+ F + S PQ+
Sbjct: 458 QGGNLTPRTWSQEPGIYKVDLKTKQNTKITA--EGYQAQFGASAERIFFMNSGDDDTPQL 515
Query: 335 YQVNLSGGETKRLTWQGSQNLGGQITPDGKFLVMVNR 371
+NL G + KR+ + +++PDG+ L R
Sbjct: 516 ASINLDGFD-KRVHYSSKHATEFRVSPDGEQLAFAER 551
Score = 52.0 bits (123), Expect = 9e-11
Identities = 53/212 (25%), Positives = 94/212 (44%), Gaps = 27/212 (12%)
Query: 223 MSPAWSPDGQTLAYVSFQNGQAEIYMMNIYSGKREKLTSFPRHNGAPRFSPDGKTLALVL 282
M+ + SPDGQ L + +IY + + G+ + L P +SP+GK +A
Sbjct: 42 MNLSVSPDGQHLVFDLL----GDIYQIPVTGGEAKPLAQGISWQMQPVYSPNGKHIAFTS 97
Query: 283 SKTGNLQVYTMDLATRRLTEVTSGRSN-NTEPFWHPDGKSLI----FTSDRG-GKPQIYQ 336
G ++ M+ VTS P W PD + LI FT+ R G +++
Sbjct: 98 DADGGDNIWIMNADGSNPRTVTSETFRLLNSPAWSPDSQYLIGRKHFTASRSLGAGEVWL 157
Query: 337 VNLSGGETKRLTWQ--GSQNLG-GQITPDGKFLVMVNRSDSG-------------FNLAK 380
+++GGE +LT + ++LG +PDG+++ G + + +
Sbjct: 158 YHVAGGEGVKLTERPNDEKDLGEPAYSPDGRYIYFSQDDTPGKTFHYSKDSVNGIYKIKR 217
Query: 381 QDLETGAMQILTK-TLLDESPSIAPNGGMVIY 411
D +TG ++IL + T P+ +P+G + Y
Sbjct: 218 YDTKTGNIEILIEGTGGAIRPTPSPDGTKLAY 249
Score = 48.9 bits (115), Expect = 8e-10
Identities = 53/186 (28%), Positives = 84/186 (45%), Gaps = 22/186 (11%)
Query: 223 MSPAWSPDGQTLAYVSFQNGQAEIYMMNIYSGKREKLTSFP-RHNGAPRFSPD-----GK 276
M P +SP+G+ +A+ S +G I++MN +TS R +P +SPD G+
Sbjct: 82 MQPVYSPNGKHIAFTSDADGGDNIWIMNADGSNPRTVTSETFRLLNSPAWSPDSQYLIGR 141
Query: 277 TLALVLSKTGNLQVYTMDLATR---RLTEVTSGRSNNTEPFWHPDGKSLIFT-SDRGGKP 332
G +V+ +A +LTE + + EP + PDG+ + F+ D GK
Sbjct: 142 KHFTASRSLGAGEVWLYHVAGGEGVKLTERPNDEKDLGEPAYSPDGRYIYFSQDDTPGKT 201
Query: 333 QIYQVNLSGG--ETKRL-TWQGS-----QNLGGQI----TPDGKFLVMVNRSDSGFNLAK 380
Y + G + KR T G+ + GG I +PDG L + R D +L
Sbjct: 202 FHYSKDSVNGIYKIKRYDTKTGNIEILIEGTGGAIRPTPSPDGTKLAYIKRDDFQSSLYL 261
Query: 381 QDLETG 386
DL++G
Sbjct: 262 LDLKSG 267
Score = 42.0 bits (97), Expect = 1e-07
Identities = 48/201 (23%), Positives = 82/201 (40%), Gaps = 29/201 (14%)
Query: 272 SPDGKTLALVLSKTGNLQVYTMDLATRRLTEVTSGRSNNTEPFWHPDGKSLIFTSDRGGK 331
SPDG+ L L +Y + + + G S +P + P+GK + FTSD G
Sbjct: 47 SPDGQHLVFDLLG----DIYQIPVTGGEAKPLAQGISWQMQPVYSPNGKHIAFTSDADGG 102
Query: 332 PQIYQVNLSGGETKRLTWQGSQNLGGQI-TPDGKFLV-----MVNRSDSGFNLAKQDLET 385
I+ +N G + +T + + L +PD ++L+ +RS + +
Sbjct: 103 DNIWIMNADGSNPRTVTSETFRLLNSPAWSPDSQYLIGRKHFTASRSLGAGEVWLYHVAG 162
Query: 386 GAMQILTKTLLDE----SPSIAPNGGMVIYSS--------IYNKANVLSMVSI------D 427
G LT+ DE P+ +P+G + +S Y+K +V + I
Sbjct: 163 GEGVKLTERPNDEKDLGEPAYSPDGRYIYFSQDDTPGKTFHYSKDSVNGIYKIKRYDTKT 222
Query: 428 GRFKARLPATNGRVRAPAWSP 448
G + + T G +R P SP
Sbjct: 223 GNIEILIEGTGGAIR-PTPSP 242
Score = 41.2 bits (95), Expect = 2e-07
Identities = 56/246 (22%), Positives = 98/246 (39%), Gaps = 38/246 (15%)
Query: 200 YQLRIADYDGYNERLVLRSKQPLMSPAWSPDGQTLAYVSFQNGQAEIYMMNIYSGKREKL 259
Y+++ D N +++ + P SPDG LAY+ + Q+ +Y++++ SG+ KL
Sbjct: 213 YKIKRYDTKTGNIEILIEGTGGAIRPTPSPDGTKLAYIKRDDFQSSLYLLDLKSGETTKL 272
Query: 260 --------------------TSFPRHNGAPRFSPDGKTLAL-VLSKTGNLQVYTMDLATR 298
++ + N F GK L V +KT +++
Sbjct: 273 FGDLDRDMQETWAIHGVYPSMAWTQDNKDIFFWAKGKINRLNVANKTVTNVPFSVKTQLD 332
Query: 299 RLTEVTSGRSNNTEPF---------WHPDGKSLIFTSDRGGKPQIYQVNLSGGETKRLTW 349
V + + + F PDG + F + +I+ +L G+ RLT
Sbjct: 333 VQPSVRFKQDIDKDVFDVKMLRMAQVSPDGSKVAFEA----LGKIWLKSLPDGKMSRLTE 388
Query: 350 QGSQ--NLGGQITPDGKFLVMVNRSDSGFNLAKQDLETG--AMQILTKTLLDESPSIAPN 405
G+ L Q + DGK +V +D + G A Q+ T+ P+ APN
Sbjct: 389 LGNDIGELYPQWSRDGKNIVFTTWNDQDQGAVQVISAKGGKAKQLTTEPGKYVEPTFAPN 448
Query: 406 GGMVIY 411
G +V+Y
Sbjct: 449 GELVVY 454
Score = 38.5 bits (88), Expect = 1e-06
Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 15/130 (11%)
Query: 272 SPDGKTLALVLSKTGNLQVYTM-DLATRRLTEVTSGRSNNTEPFWHPDGKSLIFTS---- 326
SPDG +A G + + ++ D RLTE+ + P W DGK+++FT+
Sbjct: 359 SPDGSKVAF--EALGKIWLKSLPDGKMSRLTELGND-IGELYPQWSRDGKNIVFTTWNDQ 415
Query: 327 DRGGKPQIYQVNLSGGETKRLTWQGSQNLGGQITPDGKFLVMVNRSDSGFNLAKQ--DLE 384
D+G + ++ GG+ K+LT + + + P+G+ ++V R G NL + E
Sbjct: 416 DQGA---VQVISAKGGKAKQLTTEPGKYVEPTFAPNGE--LVVYRKTQGGNLTPRTWSQE 470
Query: 385 TGAMQILTKT 394
G ++ KT
Sbjct: 471 PGIYKVDLKT 480
Score = 30.8 bits (68), Expect = 2e-04
Identities = 30/127 (23%), Positives = 47/127 (37%), Gaps = 21/127 (16%)
Query: 219 KQPLMSPAWSPDGQTLAYVSFQNGQAE-------------IYMMNIYSGKREKLTSFPRH 265
++ L PA+SPDG+ Y+ F IY + Y K +
Sbjct: 175 EKDLGEPAYSPDGR---YIYFSQDDTPGKTFHYSKDSVNGIYKIKRYDTKTGNIEILIEG 231
Query: 266 NGA---PRFSPDGKTLALVLSKTGNLQVYTMDLATRRLTEVTSGRSNNTEPFW--HPDGK 320
G P SPDG LA + +Y +DL + T++ + + W H
Sbjct: 232 TGGAIRPTPSPDGTKLAYIKRDDFQSSLYLLDLKSGETTKLFGDLDRDMQETWAIHGVYP 291
Query: 321 SLIFTSD 327
S+ +T D
Sbjct: 292 SMAWTQD 298