Pairwise Alignments

Query, 450 a.a., protein TolB from Vibrio cholerae E7946 ATCC 55056

Subject, 428 a.a., translocation protein TolB from Herbaspirillum seropedicae SmR1

 Score =  282 bits (721), Expect = 2e-80
 Identities = 162/438 (36%), Positives = 240/438 (54%), Gaps = 29/438 (6%)

Query: 13  GTGFSNIANAALELVITDGIDSARPIAIVPFKWEGATKLPEDVSAVIASDLQRSGKFSPV 72
           G  F+  + A +   IT    S  PIAI  F   G    P+ +++V+ +DL RSG F  +
Sbjct: 19  GLSFAPASQAQIRFEITGVGASQIPIAITAFP--GEESAPQQITSVVKADLARSGVFKLI 76

Query: 73  PTSKMPQTPYSEEQVNFGKWTSMGVDSLLTGTITQNAEGSYVISYQLVDIVRGQLTQGQS 132
                         VN+  W   G ++L  G++T+ A+G + + Y+L D V+      Q 
Sbjct: 77  DNGDALS---DSSAVNYADWQKRGANALAVGSVTRLADGRFDVRYRLFDTVQSS----QL 129

Query: 133 KALSQDGQLVLSKDHVLFNKVATVPASRMREYAHRIADLVYEELTGERGAFLTRIAYVVV 192
            ALS   Q  L                 +R  AH+IAD +Y++LTG  G F TRI+YV  
Sbjct: 130 SALSIGAQPQL-----------------LRLTAHKIADDIYQKLTGIPGIFSTRISYVT- 171

Query: 193 NDKDPYPYQLRIADYDGYNERLVLRSKQPLMSPAWSPDGQTLAYVSFQNGQAEIYMMNIY 252
             K    Y+L +AD DG   ++ LRS +P++SP+WSPDG  +AYVSF+  +  +Y+ N+ 
Sbjct: 172 --KSGGEYRLEVADADGEGTQVALRSNEPIISPSWSPDGTKVAYVSFEMKKPVVYIQNLV 229

Query: 253 SGKREKLTSFPRHNGAPRFSPDGKTLALVLSKTGNLQVYTMDLATRRLTEVTSGRSNNTE 312
           + +R  + +F   N AP +SPDG  LA+ L++ G  QVY ++     L  +T+    +TE
Sbjct: 230 TRQRSIVANFKGSNSAPAWSPDGSRLAVALTRDGLTQVYVINADGSGLRRLTNSAGIDTE 289

Query: 313 PFWHPDGKSLIFTSDRGGKPQIYQVNLSGGETKRLTWQGSQNLGGQITPDGKFLVMVNRS 372
           P + PDG S+ FTSDR G PQ+Y+V L GG  +R+T+ GS N+  +I+PDGK L  ++R 
Sbjct: 290 PQFSPDGGSIYFTSDRSGGPQVYKVGLDGGSPQRVTFNGSYNISPRISPDGKTLAFISRR 349

Query: 373 DSGFNLAKQDLETGAMQILTKTLLDESPSIAPNGGMVIYSSIYNKANVLSMVSIDGRFKA 432
           D  F L   DL  G    L+    D+SPS APNG  ++Y++   +   L++VS+DGR K 
Sbjct: 350 DGQFQLYALDLTNGQEIRLSDGSRDQSPSFAPNGKYIMYATEAGRRGSLAVVSVDGRIKQ 409

Query: 433 RLPATNGRVRAPAWSPFL 450
           RL    G +R P W PF+
Sbjct: 410 RLTTQAGDIREPTWGPFM 427