Pairwise Alignments

Query, 450 a.a., protein TolB from Vibrio cholerae E7946 ATCC 55056

Subject, 681 a.a., peptidase S9 prolyl oligopeptidase (RefSeq) from Shewanella sp. ANA-3

 Score = 59.3 bits (142), Expect = 4e-13
 Identities = 47/168 (27%), Positives = 79/168 (47%), Gaps = 14/168 (8%)

Query: 217 RSKQPLMSPAWSPDGQTLAYVSFQNG-----QAEIYMMNIYSGKREKLT-SFPRHNGAPR 270
           RS Q   S   SPD + +A+ ++ +      + ++++  I   K E +T   P  +  P 
Sbjct: 225 RSSQSSSSYDISPDERLIAFSAYGSDNRVDPKLDLFLATIGGSKAENITPDNPAPDLNPT 284

Query: 271 FSPDGKTLALVLSKTGNLQVYT-----MDLATRRLTEVTSGRSNNTEPF-WHPDGKSLIF 324
           FSP+GKTLA    K       T     +D+++R+LT +T+    +   F W PD K    
Sbjct: 285 FSPNGKTLAFTRQKIPGFYADTARLMLLDVSSRKLTTLTADWDRSVSQFEWTPDSKGFYA 344

Query: 325 TSDRGGKPQIYQVNLSGGETKRLTWQGSQNLGGQITPDGKFLVMVNRS 372
           + D     +IY ++   G+ K +T Q +      I  DG+ L+  N+S
Sbjct: 345 SIDDAATNRIYHIDAKSGKAKAIT-QATDYSQPAIAKDGQ-LIATNQS 390



 Score = 42.0 bits (97), Expect = 6e-08
 Identities = 64/274 (23%), Positives = 110/274 (40%), Gaps = 34/274 (12%)

Query: 201 QLRIADYDGYNERLVLRSKQPLMSPAWSPDGQTLAYVSFQNGQ--AEIYMMNIYS-GKRE 257
           QL   D +G N R +      +  P +SPDG+TLA++S +N     +IY++ +   G+  
Sbjct: 72  QLWRFDGEGKNNRAITAKGLKVSEPVFSPDGKTLAFISERNDDDAGQIYLLPMDGPGEAS 131

Query: 258 KLTSFPRHNGAPRFSPDGKTLALV--LSKTGNLQVYTMDLATRRLTEVTSGRSNNTEPFW 315
           KLT  P   G       GK L  +  +    N +     L T +  +V S R  N  P+ 
Sbjct: 132 KLTDIP--TGVNGIKWVGKHLYFISNIFPEQNWEQMKAQLKTDKDNKV-SARQWNALPYS 188

Query: 316 HPDGKSLIFTSDRGGKPQIYQVNLSGGETKRLTW-------QGSQNLGG-QITPDGKFLV 367
             D        D   +  ++++  +GG  + +T        + SQ+     I+PD + + 
Sbjct: 189 QFD-----HWLDERRQAHVFRIPATGGAVEAVTQPLGHELPRSSQSSSSYDISPDERLIA 243

Query: 368 MV-----NRSDSGFNLAKQDLETGAMQILT--KTLLDESPSIAPNGGMVIYS-----SIY 415
                  NR D   +L    +     + +T      D +P+ +PNG  + ++       Y
Sbjct: 244 FSAYGSDNRVDPKLDLFLATIGGSKAENITPDNPAPDLNPTFSPNGKTLAFTRQKIPGFY 303

Query: 416 NKANVLSMVSIDGRFKARLPATNGR-VRAPAWSP 448
                L ++ +  R    L A   R V    W+P
Sbjct: 304 ADTARLMLLDVSSRKLTTLTADWDRSVSQFEWTP 337



 Score = 35.4 bits (80), Expect = 6e-06
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 3/66 (4%)

Query: 286 GNLQVYTMDLATRRLTEVTSGRSNNTEPFWHPDGKSLIFTSDRGGKP--QIYQVNLSG-G 342
           G+ Q++  D   +    +T+     +EP + PDGK+L F S+R      QIY + + G G
Sbjct: 69  GSTQLWRFDGEGKNNRAITAKGLKVSEPVFSPDGKTLAFISERNDDDAGQIYLLPMDGPG 128

Query: 343 ETKRLT 348
           E  +LT
Sbjct: 129 EASKLT 134