Pairwise Alignments
Query, 450 a.a., protein TolB from Vibrio cholerae E7946 ATCC 55056
Subject, 716 a.a., transcriptional regulator domain-containing protein (RefSeq) from Shewanella sp. ANA-3
Score = 57.8 bits (138), Expect = 1e-12
Identities = 54/233 (23%), Positives = 99/233 (42%), Gaps = 15/233 (6%)
Query: 228 SPDGQTLAYVSFQNGQ--AEIYMMNIYSGKR--EKLTSFPRHNGAPR---FSPDGKTLAL 280
SPDGQ LAY+S IY + + E+L+ + N R FSPDGK LA+
Sbjct: 287 SPDGQYLAYISSHEADKVGGIYRLTLAKADATAERLSCESQCNYEDRDLAFSPDGKWLAI 346
Query: 281 VLSKTGNLQ--VYTMDLATRRLTEVTSGRSNNTEPFWHPDGKSLIFTSDRGGKPQIYQVN 338
+ N+ ++ DLA +T G + W P+ ++L+F ++ G + ++
Sbjct: 347 A-RRFSNISEDIFIRDLANANEKRLTQGLEDIRGLSWTPNSQALVFATEDSGSRNGFTID 405
Query: 339 LSGGETKRLTWQGSQNLGGQITPDGKFLVMVNRSD---SGFNLAKQDLETGAMQILTKTL 395
+ + L +G + ++ +G+ + R + F+L + + +L +
Sbjct: 406 IETAHIRPLDVEG-MSYPSSVSDEGELVYHQYRRQFQMAYFSLGDK-VPGSLFPLLYSGI 463
Query: 396 LDESPSIAPNGGMVIYSSIYNKANVLSMVSIDGRFKARLPATNGRVRAPAWSP 448
+P +P G +++ S N + I G+ + RV P WSP
Sbjct: 464 SHRNPHYSPEAGRIVFVSSDTGYNEIWTSDIKGQKLEQHTQLKSRVAYPRWSP 516
Score = 57.8 bits (138), Expect = 1e-12
Identities = 42/155 (27%), Positives = 69/155 (44%), Gaps = 15/155 (9%)
Query: 186 RIAYVVVNDKDPYPYQLRIADYDGYNERLVLRSKQPLMSPAWSPDGQTLAYVSFQNGQAE 245
++AY + DK P L Y G + R +P +SP+ + +VS G E
Sbjct: 441 QMAYFSLGDK--VPGSLFPLLYSGISHR----------NPHYSPEAGRIVFVSSDTGYNE 488
Query: 246 IYMMNIYSGKREKLTSFPRHNGAPRFSPDGKTLALVLSKTGN--LQVYTMDLATRRLTEV 303
I+ +I K E+ T PR+SPDG +A + N +++ +DL + +T +
Sbjct: 489 IWTSDIKGQKLEQHTQLKSRVAYPRWSPDGSKIAFIAPDDRNEGNRIFILDLTNKNITAL 548
Query: 304 TSGRSNNTEPFWHPDGKSLIFTSDRGGKPQIYQVN 338
S N+ P W+ G + +F S G + Y N
Sbjct: 549 ASSYHNHGRPSWNWQG-TAVFASTSDGITEFYLDN 582
Score = 43.1 bits (100), Expect = 3e-08
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 269 PRFSPDGKTLALVLSKTGNLQVYTMDLATRRLTEVTSGRSNNTEPFWHPDGKSLIFTS-- 326
P +SP+ + V S TG +++T D+ ++L + T +S P W PDG + F +
Sbjct: 468 PHYSPEAGRIVFVSSDTGYNEIWTSDIKGQKLEQHTQLKSRVAYPRWSPDGSKIAFIAPD 527
Query: 327 DRGGKPQIYQVNLS 340
DR +I+ ++L+
Sbjct: 528 DRNEGNRIFILDLT 541
Score = 36.2 bits (82), Expect = 4e-06
Identities = 44/236 (18%), Positives = 90/236 (38%), Gaps = 49/236 (20%)
Query: 187 IAYVVVNDKDPYP--YQLRIADYDGYNERLVLRSKQPLMSP--AWSPDGQTLAYVS-FQN 241
+AY+ ++ D Y+L +A D ERL S+ A+SPDG+ LA F N
Sbjct: 293 LAYISSHEADKVGGIYRLTLAKADATAERLSCESQCNYEDRDLAFSPDGKWLAIARRFSN 352
Query: 242 GQAEIYMMNIYSGKREKLTSFPRHNGAPRFSPDGKTLALVLSKTGNLQVYTMDLATRRLT 301
+I++ ++ + ++LT ++P+ + L +G+ +T+D+ T +
Sbjct: 353 ISEDIFIRDLANANEKRLTQGLEDIRGLSWTPNSQALVFATEDSGSRNGFTIDIETAHIR 412
Query: 302 EV-TSGRS-------------------------------------------NNTEPFWHP 317
+ G S ++ P + P
Sbjct: 413 PLDVEGMSYPSSVSDEGELVYHQYRRQFQMAYFSLGDKVPGSLFPLLYSGISHRNPHYSP 472
Query: 318 DGKSLIFTSDRGGKPQIYQVNLSGGETKRLTWQGSQNLGGQITPDGKFLVMVNRSD 373
+ ++F S G +I+ ++ G + ++ T S+ + +PDG + + D
Sbjct: 473 EAGRIVFVSSDTGYNEIWTSDIKGQKLEQHTQLKSRVAYPRWSPDGSKIAFIAPDD 528
Score = 33.1 bits (74), Expect = 3e-05
Identities = 48/221 (21%), Positives = 82/221 (37%), Gaps = 21/221 (9%)
Query: 249 MNIYSGKREK-------LTSFPRHNGAPRFSPDGKTLALVLSKTG-NLQVYTMDLATRRL 300
M++Y K+ LT P PR S D + L S+ G +Y D +
Sbjct: 164 MHLYQDKQRMTDTQMTVLTRDPGSERYPRLSHDRRWLVYGASRPGVTSSLYLKDFKREDV 223
Query: 301 T--EVTSGRSNNTEPFWHPDGKSLIFTS--DRGGKPQIYQVNLSGGETKRLTWQGSQNLG 356
++T S W D L F S GK I Q+ L+ E L +
Sbjct: 224 PARQLTPSTSVELRAVWSLDDTKLFFASRSHATGKCTITQLTLATNEMLALAPCSTDMAA 283
Query: 357 GQITPDGKFLVMVNRSDSG-------FNLAKQDLETGAMQILTK-TLLDESPSIAPNG-G 407
I+PDG++L ++ ++ LAK D + ++ D + +P+G
Sbjct: 284 IDISPDGQYLAYISSHEADKVGGIYRLTLAKADATAERLSCESQCNYEDRDLAFSPDGKW 343
Query: 408 MVIYSSIYNKANVLSMVSIDGRFKARLPATNGRVRAPAWSP 448
+ I N + + + + + RL +R +W+P
Sbjct: 344 LAIARRFSNISEDIFIRDLANANEKRLTQGLEDIRGLSWTP 384