Pairwise Alignments
Query, 450 a.a., protein TolB from Vibrio cholerae E7946 ATCC 55056
Subject, 1062 a.a., amidohydrolase (RefSeq) from Shewanella sp. ANA-3
Score = 57.0 bits (136), Expect = 3e-12
Identities = 46/166 (27%), Positives = 67/166 (40%), Gaps = 22/166 (13%)
Query: 204 IADYDGYNERLVLRSKQPLM-SPAWSPDGQTLA-----YVSFQNGQAEIYMMNIYSGKRE 257
I D DG N R V L+ SPAWSPD + L S G E+++ ++ G+
Sbjct: 120 IMDADGSNPRTVTTETFRLLNSPAWSPDSEYLVGRKHFTASRSLGAGEVWLYHVAGGEGV 179
Query: 258 KLTSFPRHN---GAPRFSPDGKTLALVLSKT-------------GNLQVYTMDLATRRLT 301
KLT P G P +SPDG+ + T G ++ D T +
Sbjct: 180 KLTERPNDEKDLGEPAYSPDGRYIYFSQDDTPGKTFHYSKDSVNGIYKIKRYDTQTGDIE 239
Query: 302 EVTSGRSNNTEPFWHPDGKSLIFTSDRGGKPQIYQVNLSGGETKRL 347
+ G P PDG L + + +Y ++L GET +L
Sbjct: 240 ILIEGTGGAIRPTPSPDGTKLAYIKRDDFQSSLYLLDLKSGETTKL 285
Score = 53.5 bits (127), Expect = 3e-11
Identities = 52/212 (24%), Positives = 94/212 (44%), Gaps = 27/212 (12%)
Query: 223 MSPAWSPDGQTLAYVSFQNGQAEIYMMNIYSGKREKLTSFPRHNGAPRFSPDGKTLALVL 282
M+ + SPDG+ L + +IY + + G+ + L P +SPDGK +A
Sbjct: 55 MNISVSPDGKHLVFDLL----GDIYQIPVTGGEAKPLAQGIAWQMQPVYSPDGKHIAFTS 110
Query: 283 SKTGNLQVYTMDL-ATRRLTEVTSGRSNNTEPFWHPDGKSLI----FTSDRG-GKPQIYQ 336
G ++ MD + T T P W PD + L+ FT+ R G +++
Sbjct: 111 DADGGDNIWIMDADGSNPRTVTTETFRLLNSPAWSPDSEYLVGRKHFTASRSLGAGEVWL 170
Query: 337 VNLSGGETKRLTWQ--GSQNLG-GQITPDGKFLVMVNRSDSG-------------FNLAK 380
+++GGE +LT + ++LG +PDG+++ G + + +
Sbjct: 171 YHVAGGEGVKLTERPNDEKDLGEPAYSPDGRYIYFSQDDTPGKTFHYSKDSVNGIYKIKR 230
Query: 381 QDLETGAMQILTK-TLLDESPSIAPNGGMVIY 411
D +TG ++IL + T P+ +P+G + Y
Sbjct: 231 YDTQTGDIEILIEGTGGAIRPTPSPDGTKLAY 262
Score = 47.8 bits (112), Expect = 2e-09
Identities = 34/157 (21%), Positives = 72/157 (45%), Gaps = 13/157 (8%)
Query: 225 PAWSPDGQTLAYVSFQN-GQAEIYMMNIYSGKREKLTSFPRHNGAPRFSPDGKTLALVLS 283
P WS DG+ + + ++ + Q + +++ GK ++LT+ P FSP+G+ + +
Sbjct: 411 PQWSRDGKNIVFTTWNDQDQGTVQVISAKGGKAKQLTTETGKYVEPTFSPNGELVVYRKT 470
Query: 284 KTGNLQ---------VYTMDLATRRLTEVTSGRSNNTEPFWHPDGKSLIFTSDRGGKPQI 334
+ G+L +Y +DL T++ ++++ F + + PQ+
Sbjct: 471 QGGHLTPRTWSQEPGLYKVDLKTKQNKKISA--EGYQAQFGASADRIFFMNTGDNDTPQL 528
Query: 335 YQVNLSGGETKRLTWQGSQNLGGQITPDGKFLVMVNR 371
+NL G + KR+ + +++PDG+ L R
Sbjct: 529 ASINLDGFD-KRVHYSSKHATEFRVSPDGEQLAFAER 564
Score = 42.7 bits (99), Expect = 6e-08
Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 16/174 (9%)
Query: 272 SPDGKTLALVLSKTGNLQVYTMDLATRRLTEVTSGRSNNTEPFWHPDGKSLIFTSDRGGK 331
SPDGK L L +Y + + + G + +P + PDGK + FTSD G
Sbjct: 60 SPDGKHLVFDLLG----DIYQIPVTGGEAKPLAQGIAWQMQPVYSPDGKHIAFTSDADGG 115
Query: 332 PQIYQVNLSGGETKRLTWQGSQNLGGQI-TPDGKFLV-----MVNRSDSGFNLAKQDLET 385
I+ ++ G + +T + + L +PD ++LV +RS + +
Sbjct: 116 DNIWIMDADGSNPRTVTTETFRLLNSPAWSPDSEYLVGRKHFTASRSLGAGEVWLYHVAG 175
Query: 386 GAMQILTKTLLDE----SPSIAPNGGMVIYS--SIYNKANVLSMVSIDGRFKAR 433
G LT+ DE P+ +P+G + +S K S S++G +K +
Sbjct: 176 GEGVKLTERPNDEKDLGEPAYSPDGRYIYFSQDDTPGKTFHYSKDSVNGIYKIK 229
Score = 41.2 bits (95), Expect = 2e-07
Identities = 57/258 (22%), Positives = 101/258 (39%), Gaps = 62/258 (24%)
Query: 200 YQLRIADYDGYNERLVLRSKQPLMSPAWSPDGQTLAYVSFQNGQAEIYMMNIYSGKREKL 259
Y+++ D + +++ + P SPDG LAY+ + Q+ +Y++++ SG+ KL
Sbjct: 226 YKIKRYDTQTGDIEILIEGTGGAIRPTPSPDGTKLAYIKRDDFQSSLYLLDLKSGETTKL 285
Query: 260 --------------------TSFPRHNGAPRFSPDGKTLAL-VLSKT------------- 285
++ + N F GK L V +KT
Sbjct: 286 YGDLERDMQETWAIHGVYPTMAWTQDNKDIFFWAKGKINRLNVANKTVTNIPFSVKTQLD 345
Query: 286 --------GNLQVYTMDLATRRLTEVTSGRSNNTEPFWHPDGKSLIFTSDRGGKPQIYQV 337
++ D+ R+T+V+ PDG + F + +I+
Sbjct: 346 VQPSVRFKQDIDKDVFDVKMLRMTQVS------------PDGSKVAFEA----LGKIWLK 389
Query: 338 NLSGGETKRLTWQGS--QNLGGQITPDGKFLVMVNRSDSGFNLAKQDLETG--AMQILTK 393
L G+ RLT G+ + L Q + DGK +V +D + G A Q+ T+
Sbjct: 390 TLPDGKMTRLTELGNDIEELYPQWSRDGKNIVFTTWNDQDQGTVQVISAKGGKAKQLTTE 449
Query: 394 TLLDESPSIAPNGGMVIY 411
T P+ +PNG +V+Y
Sbjct: 450 TGKYVEPTFSPNGELVVY 467
Score = 30.4 bits (67), Expect = 3e-04
Identities = 56/276 (20%), Positives = 103/276 (37%), Gaps = 49/276 (17%)
Query: 219 KQPLMSPAWSPDGQTLAYVSFQ----------------NGQAEIYMMNIYSGKREKLTSF 262
++ L PA+SPDG+ Y+ F NG +I + +G E L
Sbjct: 188 EKDLGEPAYSPDGR---YIYFSQDDTPGKTFHYSKDSVNGIYKIKRYDTQTGDIEILIEG 244
Query: 263 PRHNGAPRFSPDGKTLALVLSKTGNLQVYTMDLATRRLTEVTSGRSNNTEPFW--HPDGK 320
P SPDG LA + +Y +DL + T++ + + W H
Sbjct: 245 TGGAIRPTPSPDGTKLAYIKRDDFQSSLYLLDLKSGETTKLYGDLERDMQETWAIHGVYP 304
Query: 321 SLIFTSDR-----GGKPQIYQVNLSGGETKRLTWQGSQNLGGQITP-----------DGK 364
++ +T D K +I ++N++ + + L Q + D K
Sbjct: 305 TMAWTQDNKDIFFWAKGKINRLNVANKTVTNIPFSVKTQLDVQPSVRFKQDIDKDVFDVK 364
Query: 365 FLVMVNRSDSGFNLA--------KQDLETGAMQILTK---TLLDESPSIAPNGGMVIYSS 413
L M S G +A + L G M LT+ + + P + +G +++++
Sbjct: 365 MLRMTQVSPDGSKVAFEALGKIWLKTLPDGKMTRLTELGNDIEELYPQWSRDGKNIVFTT 424
Query: 414 IYNK-ANVLSMVSIDGRFKARLPATNGRVRAPAWSP 448
++ + ++S G +L G+ P +SP
Sbjct: 425 WNDQDQGTVQVISAKGGKAKQLTTETGKYVEPTFSP 460