Pairwise Alignments

Query, 254 a.a., tol-pal system protein YbgF from Vibrio cholerae E7946 ATCC 55056

Subject, 999 a.a., tetratricopeptide repeat protein from Parabacteroides merdae CL09T00C40

 Score = 61.2 bits (147), Expect = 8e-14
 Identities = 43/139 (30%), Positives = 71/139 (51%), Gaps = 4/139 (2%)

Query: 117 LPTSSNDEAAQGTFSSDANEQAAYQNAVDLILKKRDYAGAIAAFQKFQTDYPNSTFSANA 176
           L   +   AAQ   S  A + + YQ    L L+K DY G I+A  +  ++YP S +  +A
Sbjct: 562 LAEENYSRAAQ--LSPSAGDYSIYQKGFLLGLQK-DYKGKISAMDRLISEYPESQYVDDA 618

Query: 177 HYWLGQLYFAKKEDKEAAKSFAAVVSDKGSNKRA-DALVKLGDIAKRNNNAEQARKFYQQ 235
            +  G+ Y   +    AA++F  ++ +   +  A  A ++LG +   +N  E+A   Y+Q
Sbjct: 619 LFEKGRSYVLLENSSSAAQAFEKLIREFPLSSLARKAGIQLGLLYYNDNQPEKALAAYKQ 678

Query: 236 AVDEYPDSASAKIAKENLK 254
            +  YP S  AKIA ++LK
Sbjct: 679 VISNYPGSEEAKIALQDLK 697



 Score = 47.0 bits (110), Expect = 2e-09
 Identities = 27/106 (25%), Positives = 55/106 (51%), Gaps = 2/106 (1%)

Query: 143 AVDLILKKRDYAGAIAAFQKFQTDYPNSTFSANAHYWLGQLYFAKKEDKEAAKSFAAVVS 202
           A + +  + D  GA  +   +   +P   FS+NA+++LG + FAKKE  EA + F +V++
Sbjct: 734 AAEKLFMRGDNDGARRSLINYLQTFPEGAFSSNANFYLGSIAFAKKEFDEAIQRFKSVIA 793

Query: 203 DKGSNKRADALVKLGDIAKRNNNAEQARKFYQ--QAVDEYPDSASA 246
              +    +++ +  +I   + +   A + ++  Q V E P++  A
Sbjct: 794 SGDTKFLEESVARTAEIEYLSKDYPAALESFKRLQIVAENPENRQA 839



 Score = 37.0 bits (84), Expect = 2e-06
 Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 8/127 (6%)

Query: 128 GTFSSDANEQAAYQNAVDLILKKRDYAGAIAAFQKF--QTDYPNSTFSANAHYWLGQLYF 185
           G+++ +A   A +    +   +  +Y  AI+ ++ +   T   N+   A A+Y LG  YF
Sbjct: 458 GSYNMEARNDAYFWRG-ESYYRMGEYENAISDYRTYLNNTRQRNTDMYALAYYNLGYSYF 516

Query: 186 AKKEDKEAAKSFAAVVSDKGSNKRA----DALVKLGDIAKRNNNAEQARKFYQQAVDEYP 241
             ++   A   F   V D  SN++A    DA  ++GD   +N     A + Y +A    P
Sbjct: 517 KLRDYSAALNRFRQYV-DLESNRQAASLADAYNRIGDCLYQNRQFSLAEENYSRAAQLSP 575

Query: 242 DSASAKI 248
            +    I
Sbjct: 576 SAGDYSI 582



 Score = 33.1 bits (74), Expect = 2e-05
 Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 4/112 (3%)

Query: 131 SSDANEQAAYQNAVDLILKKRDYAGAIAAFQKFQTDYPNSTFSANAHYWLGQLYFAKKED 190
           S +   +A Y  A   I +K+    A+A  ++   D   +   A A Y L QLY+   +D
Sbjct: 871 SPELEAEARYVRAKAYIAQKQANK-ALADLKELSKD-TRTVHGAEAKYLLAQLYYDTNDD 928

Query: 191 KEAAKSFAAVVSDKGSNK--RADALVKLGDIAKRNNNAEQARKFYQQAVDEY 240
           K A K     + +   ++   A   + L DI  R  +  QAR++     + Y
Sbjct: 929 KNAEKVLMNFIENGTPHQYWLARGFILLADIYIRQGDDFQARQYLTSLQNNY 980



 Score = 24.6 bits (52), Expect = 0.008
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 150 KRDYAGAIAAFQKFQTDYPNSTFSANAHYWLGQLYFAKKEDKEAAKSFAAVVS 202
           K +Y+  + A  +  T   N   + NA+ +LGQ Y    +   A  +F A  +
Sbjct: 292 KGNYSNTVNALSR--TVRQNDELTQNAYLYLGQSYLKLGDKNNARMAFEAAAT 342