Pairwise Alignments

Query, 254 a.a., tol-pal system protein YbgF from Vibrio cholerae E7946 ATCC 55056

Subject, 250 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  186 bits (472), Expect = 4e-52
 Identities = 106/251 (42%), Positives = 161/251 (64%), Gaps = 8/251 (3%)

Query: 5   LKHVVMLMLLASAASYALAAPAPVSDLGSNVSGGSRSSEIERLERLLESRNLVQLQMQKQ 64
           +K  V++  +   A  A+AAPAPV DL    +GGS    + RLER+++SR   ++ MQ++
Sbjct: 1   MKRAVLITAMFFGAGAAVAAPAPVEDL----AGGSGDDRLARLERIVKSRQQSEIDMQRR 56

Query: 65  LDDMALEVNELRGQIEKNNYDMQQMLQRQRELFVELDRVRGEMKSPSSGAGQLP-TSSND 123
           LD +  EV +LRG  E+ NY ++QM QRQR+L+ E+  +    K+ ++ A  +P T +  
Sbjct: 57  LDTLQQEVLDLRGLTEQQNYQIEQMQQRQRQLYDEIANLSS--KATATPAASVPATPAAV 114

Query: 124 EAAQGTFSSDANEQAAYQNAVDLILKKRDYAGAIAAFQKFQTDYPNSTFSANAHYWLGQL 183
            A     +S  +E A+Y++AV+L+LK+R Y  AI AF+ F   YP+S ++ANA+YWLGQL
Sbjct: 115 AATANAAASSLSETASYESAVNLVLKERKYDDAIPAFRAFIKQYPDSVYAANANYWLGQL 174

Query: 184 YFAKKEDKEAAKSFAAVVSD-KGSNKRADALVKLGDIAKRNNNAEQARKFYQQAVDEYPD 242
            F K E  EA + F  VV+    SNKR D+LVKLG IA++  +   A ++YQQ V +Y +
Sbjct: 175 LFNKSEFAEAKQVFNTVVTRFSDSNKRGDSLVKLGMIAEKTGDKAGATQYYQQVVKDYAN 234

Query: 243 SASAKIAKENL 253
           SA+A+IA++ L
Sbjct: 235 SAAARIAQQQL 245



 Score = 23.5 bits (49), Expect = 0.004
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 132 SDANEQAAYQNAVDLILKKR-DYAGAIAAFQKFQTDYPNSTFSANAHYWLGQL 183
           SD+N++      + +I +K  D AGA   +Q+   DY NS  +  A   L  +
Sbjct: 196 SDSNKRGDSLVKLGMIAEKTGDKAGATQYYQQVVKDYANSAAARIAQQQLAAI 248