Pairwise Alignments

Query, 736 a.a., histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 1353 a.a., PAS from Pseudomonas syringae pv. syringae B728a

 Score =  218 bits (555), Expect = 2e-60
 Identities = 136/378 (35%), Positives = 213/378 (56%), Gaps = 18/378 (4%)

Query: 302 PIVLIAKKVSESREGEIIDIRYKSQDEIRHLIDTFNQKTIYLEAEKVKAQASTKAKSAFL 361
           P+++I   +  + +GE+I     +QD    L       +  L A K  A+A+  AKS FL
Sbjct: 593 PVLMIITPI-RTADGELIGHLGIAQDITERL-----HHSAELHAAKSSAEAANAAKSLFL 646

Query: 362 ATLSHEIRTPMNGVLGTAQILLKDELTSKQRQHLTSLYESGEHMMSLLNEILDYSKIEQG 421
           A +SHEIRTPMN V+G + +L    L  +QRQ LT L  +G  ++ ++N+ILD +KIE G
Sbjct: 647 ANMSHEIRTPMNAVIGISHLLHNTALNDQQRQLLTKLQIAGRTLLGIINDILDIAKIEAG 706

Query: 422 KFELDHSAFPLKSIIGSIKSIYSSLCVEKGLKFQLNSEITDGRWYYGDKARLRQIIFNLL 481
           +  L+H+ F  + ++  +  +++    EKGL+F +N   +      GD  R+ QI+ NL+
Sbjct: 707 EMRLEHNPFSPRQLLDELGELFTPQAQEKGLRFSVNVVASLPGQLIGDALRVNQILMNLV 766

Query: 482 SNAVKFTEAGFVAIGLSEESCDEEN-YLIIKVQDTGIGIAQESLGRIFRPFEQAESHTTR 540
            NA+KFT  G V + +S E    +   L   VQDTG GI  + LG++F PF QA++ TTR
Sbjct: 767 GNALKFTSVGGVDVTVSREDDHADTCCLRFSVQDTGCGIPGDVLGQLFSPFTQADASTTR 826

Query: 541 RFGGTGLGLAIVKQIAELMNGTVLVQSEVGQGSCFKVRVKLAITEPVTEDVKPTKAKTYP 600
           RFGGTGLGL++V+ +AE M G + V+SE+G GS F V +   I++    D++P+   +  
Sbjct: 827 RFGGTGLGLSVVRGLAEQMGGRIGVESELGTGSEFWVELPFQISQ---SDLEPSGPGS-- 881

Query: 601 GLRVLIVEDNRTNIMILEAFMRNKGFECHSVMDGVQAITALQESSF------DLVLMDNH 654
            L V+++ D+  + M L+   R  G+   S+       TALQE +       D++L+D  
Sbjct: 882 SLEVMLLSDDAQSSMALQRLCRGLGWRVASLTGEHDLRTALQERNHVNAALPDVLLVDWQ 941

Query: 655 MPLKDGIQATREIRQLPL 672
            P  + +Q   E   LP+
Sbjct: 942 QPQVEEVQQLIEATPLPV 959



 Score = 62.8 bits (151), Expect = 1e-13
 Identities = 38/125 (30%), Positives = 66/125 (52%), Gaps = 3/125 (2%)

Query: 601  GLRVLIVEDNRTNIMILEAFMRNKGFECHSVMDGVQAITALQESS--FDLVLMDNHMPLK 658
            GL +L+V+D+  N+ +    ++ +G    +  +G+ A+  L+++   FD VLMD  MP  
Sbjct: 1022 GLHLLLVDDSEINLEVASLLLQQQGAVVQTCSNGLLALERLRQTPDFFDAVLMDVQMPEM 1081

Query: 659  DGIQATREIRQLPLPQAKILLFGCTADVFKDTRDKMLSAGADDIIAKPIAEHELDMALEQ 718
            DG +ATR +R   L   ++ +   TA    + R +   AG DD + KP+    L  A+ +
Sbjct: 1082 DGYEATRRLRS-ELGLTRLPVLALTAGALAEERRQAELAGMDDFLTKPLDPAALIRAVRR 1140

Query: 719  HSERL 723
              ER+
Sbjct: 1141 AVERV 1145